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Transcription Profiling in Drosophila Eyes That Overexpress the Human Glaucoma-Associated Trabecular Meshwork-Inducible Glucocorticoid Response Protein/Myocilin (TIGR/MYOC)
Teresa Borrása, Tatiana V. Morozovab,e, Stefanie L. Heinsohne,c, Richard F. Lymane,c, Trudy F. C. Mackaye,c, and Robert R. H. Anholte,c,da Department of Ophthalmology, Duke University Medical Center, Durham, North Carolina 27710,
b Institute of Molecular Genetics, Moscow 123182, Russia,
c Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695
d Department of Zoology, North Carolina State University, Raleigh, North Carolina 27695
e The W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, North Carolina 27695
Corresponding author: Robert R. H. Anholt, Box 7617, North Carolina State University, Raleigh, North Carolina 27695., anholt{at}ncsu.edu (E-mail)
Communicating editor: K. V. ANDERSON
| ABSTRACT |
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The availability of the human genome sequence together with sequenced genomes of several model organisms provides an unprecedented opportunity to utilize comparative genomic approaches for the discovery of genes that contribute to human disease. We have used transgenic flies to establish an experimental paradigm for the discovery of genes that might be involved in the development of glaucoma, a prevalent disease affecting a large segment of the population. Inherited mutations in the trabecular meshwork-inducible glucocorticoid response protein/myocilin (TIGR/MYOC) are associated with juvenile glaucoma and some cases of adult primary open angle glaucoma. The interrelationships between TIGR/MYOC and the development of glaucoma, however, are not understood. We show that overexpression of human TIGR/MYOC in the eyes of Drosophila melanogaster results in distortion of ommatidia accompanied by fluid discharge. High-density oligonucleotide microarrays identified altered expression of 50 transcripts in response to TIGR/MYOC overexpression, including homologs of aquaporin-4 and cytochrome-P450, previously associated with glaucoma, and several proteins of unknown function. We found that expression of Swiss Cheese, a neurodegenerative protein, increased 34-fold and that its human ortholog, neuropathy target esterase, is also upregulated in response to adenovirus-mediated overexpression of TIGR/MYOC in perfused postmortem human eyes. Our observations establish the Drosophila eye as an advantageous system for the discovery of genes that are associated with glaucoma.
THE availability of the human genome sequence together with sequenced genomes of several model organisms provides an unprecedented opportunity to utilize comparative genomic approaches for the discovery of genes that contribute to human disease. Drosophila melanogaster is a particularly powerful genetic model organism and is becoming increasingly appreciated as a model for human disease (![]()
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Glaucoma is the second leading cause of blindness affecting
66 million people worldwide (![]()
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Previously, D. melanogaster has been used as a model for a variety of neurodegenerative diseases (![]()
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| MATERIALS AND METHODS |
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Generation and maintenance of transgenic flies:
A cDNA insert encoding the complete coding region of human TIGR/MYOC was excised from the pMC2 vector and cloned into the KpnI and NotI sites of the pUAST transformation vector. The sequence of the cloned insert was confirmed and the construct was designated pUAST-TIGR. P-element transformation was performed in the Samarkand w1118 strain (![]()
25.7wc (![]()
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TIGR/MYOC antibody:
The DNA sequence encoding the first 148 amino acids of TIGR/MYOC was amplified from genomic DNA with primers 5'-GGTATTGAGGGTCGCAGGACAGCTCAGCTCAGCTCAGGAAG-3' and 5'-AGAGGAGAGTTAGAGCCTCACAGCCTTGCTACCTCCTG-3'. Conditions for PCR amplification were 1 min at 94°, 2 min at 58°, and 3 min at 72° for 30 cycles followed by 10 min of incubation at 72°. The amplification product was cloned into the pET-32 Xa/LIC vector (Novagen, Cambridge, MA) and its sequence was verified. Following purification of the resulting thioredoxin fusion protein, rabbit antibodies were produced and tested against a preparation of perfused postmortem human eyes overexpressing TIGR/MYOC. The antisera showed specific immunoreactivity at 5000-fold dilution. Expression of TIGR/MYOC in transgenic flies was analyzed by Western blots with a 2500-fold dilution of antiserum. Bound antibody was visualized with a horseradish peroxidase-labeled goat-anti-rabbit secondary antibody using 3'3-diaminobenzidine as the chromogen (Vector Laboratories, Burlingame, CA). Migration distances were calibrated against Kaleidoscope prestained low-molecular-weight markers (Bio-Rad, Hercules, CA).
Transcriptional profiling:
For gene profiling studies, RNA was extracted from heads of adult flies; harvested 35 days posteclosion; reared under controlled conditions of temperature (25°), humidity (70%), and light cycle (12 hr/12 hr); and deprived of food for several hours prior to RNA extraction. Biotinylated cRNA probes were prepared for hybridizations to high-density oligonucleotide microarrays (Affymetrix) and visualized with a streptavidin-phycoerythrin conjugate, as described in the Affymetrix GeneChip Expression Analysis 2000 technical manual, using internal references for quantification.
The average difference (AD) values were obtained for each gene (Affymetrix GeneChip Expression Analysis 2000 technical manual) and analyzed by one-way ANOVA according to the model Y = µ + G + E, where G is the effect of genotype (pUAST-TIGR and gmr-GAL4 parents and the pUAST-TIGR; gmr-GAL4 F1 hybrid) and E is the error variance. All genes for which the main effect of G was significant at P < 0.05 were further tested to determine whether the mean expression of the F1 hybrid was significantly different from the average of the two parental strains. Analyses were performed using Proc GLM and Proc Means using SAS statistical software. Candidate genes for which expression in the F1 was significantly different from the mean of the parents at P < 0.01 were further filtered by requiring that there were no more than four absent calls, that AD values in the F1 were at least 600 units, and that the difference in expression between the F1 and the midparent was twofold or greater. Original microarray data sets are accessible at http://www.genetics.org/supplemental/.
Expression of TIGR/MYOC in perfused postmortem human eyes:
Anterior segment organ cultures were prepared from postmortem human eyes within 3040 hr of death (![]()
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For mRNA quantitation of TIGR/MYOC and NTE, reverse transcriptions were performed using random primers (Ambion). Multiplex amplifications for each gene and ribosomal RNA were performed in triplicate with a predetermined linear cycle range. Ribosomal RNA was amplified at a nonsaturated concentration with a QuantumRNA 18S primer-competimer set (Ambion). Primers for TIGR/MYOC were 5'-CTGGAGGAAGAGAAGAAGCGACTAA-3' and 5'-CTGTGTCATAAGCAAAGTTGACGGTA-3'. Primers for NTE were 5'-GGAAGAGGGACAAAGTGCTCTTCTA-3' and 5'-TAGCTGAGGTGCTGACCATTCT-3'. Amplified products were run in a 2% ethidium bromide agarose gel, band intensities were captured with a ChemiDoc system and LabWorks software (UVP, Upland, CA), and values were transferred to an Excel spreadsheet for calculation of means and standard errors.
| RESULTS |
|---|
Overexpression of TIGR/MYOC in Drosophila eyes results in periodic fluid discharge:
To drive overexpression of TIGR/MYOC in the Drosophila eye we cloned a full-length cDNA encoding TIGR/MYOC into the pUAST transformation vector and generated transgenic pUAST-TIGR flies. In situ hybridization with a probe corresponding to the white gene to larval polytene salivary gland chromosomes showed that the transgene had inserted in cytological location 58E. We used transactivation through the binary GAL4-UAS system (![]()
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Whereas the eyes of the parental strains appear normal (Fig 2A), flies carrying both the gmr-GAL4 and the pUAST-TIGR constructs show periodic discharge of liquid from their eyes (Fig 2B). We observed droplets emerging from focal regions of the eye as well as large wet areas that dried to a crusty residue (Fig 2C). Flies at different stages of ocular fluid discharge were observed, ranging from eyes that appeared normal to eyes with extensive liquid discharge. Precise quantification of this phenotype is difficult, since fluid discharge is rapid and transient, and transferring flies from their vial onto a microscope stage easily brushes the liquid or residues off. Attempts to quantify this phenotype would, therefore, lead to gross underestimates and not faithfully represent the occurrence of fluid discharge. Thus, the assessment of the phenotype is at present only qualitative. However, flies discharging liquid from their eyes are readily observed in every batch examined.
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Our observations suggest that either fluid extrusion occurs periodically in all flies or only a subpopulation displays this phenotype. To resolve this question we examined histological sections through heads from both parental strains and their progeny. Parental pUAST-TIGR flies show a normal geometric array of ommatidia (Fig 3A). Ommatidia of all flies carrying both the gmr-GAL4 and the pUAST-TIGR transgenes, however, are distorted with convex boundaries (Fig 3B). Such distorted ommatidia are observed in all eyes of TIGR/MYOC-overexpressing flies, but never in controls. Since we observe in each section 50 fly heads in many, random orientations, we can rule out artifacts due to different planes of sectioning. In some cases the surface of the eye contains a dimpled area, underneath which ommatidia appear to have regained their normal shape (Fig 3C). We interpret such areas as regions where recent fluid discharge has occurred. These observations and our finding that all F1 flies observed histologically showed morphological abnormalities favor our interpretation that fluid discharge occurs periodically in all flies in which TIGR/MYOC is overexpressed in the eye.
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To ascertain that the F1 phenotype did not reflect a positional effect of the pUAST-TIGR insertion site rather than the action of TIGR/MYOC protein, we evaluated an additional independent transformant line. Offspring from crosses with the gmr-GAL4 line contained flies that displayed the same ocular fluid discharge. We conclude that in the Drosophila system overexpression of TIGR/MYOC alone is sufficient to produce the ocular fluid discharge phenotype.
Modification of the transcriptome in Drosophila eyes that overexpress TIGR/MYOC:
We investigated the genome-wide transcriptional response to TIGR/MYOC overexpression in transgenic flies to identify candidate genes with homologs whose expression may change in human eyes that overexpress TIGR/MYOC. We compared expression profiles of the parental gmr-GAL4 and pUAST-TIGR lines and the TIGR/MYOC-expressing hybrid. Duplicate RNA samples were extracted from heads of equal numbers of male and female flies and hybridized to high-density oligonucleotide expression arrays (Affymetrix). Data for each gene were analyzed by one-way ANOVA and
700 genes with significant variation were identified. To take into account the different genetic backgrounds of the parental lines, we tested for each of these genes whether the mean level of expression in the F1 was significantly different from the average of the two parental lines and retained genes with a contrast P value <0.01. Since our microarray data could nonetheless be influenced by genetic background effects in this mixed parental genotype transgenic model and to reduce the likelihood of false positives, we further imposed the constraints that the mean expression in the F1 be 600 units greater and be twofold or more different from the midparent. The 20 upregulated and 30 downregulated transcripts satisfying these criteria are listed in Table 1. Original microarray data sets are accessible at http://www.genetics.org/supplemental/.
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Overexpression of TIGR/MYOC induces protein kinase C 98E and a serine/threonine kinase, both of unknown function. In addition, there is upregulation of a protein tyrosine kinase and a transmembrane receptor protein tyrosine phosphatase, suggesting induction of post-translational modifications of multiple target proteins. Of special interest is the dramatic 34-fold upregulation of the expression of a neurodegenerative protein, Swiss Cheese (![]()
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Upregulation of the human ortholog of the Drosophila swiss cheese gene product in the trabecular meshwork of postmortem human eyes that express TIGR/MYOC:
The restricted group of gene products modulated by TIGR/MYOC overexpression includes proteins previously implicated in glaucoma. We hypothesized that other proteinseither of unknown function or of known function but not previously implicated in glaucomathat show altered expression in the Drosophila eye as a consequence of TIGR/MYOC expression might also contribute to the pathogenesis of glaucoma. To validate this hypothesis we focused on the swiss cheese transcript (![]()
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Data averaged from triplicate measurements of three separate sets of eyes show that increased expression of TIGR/MYOC is accompanied by upregulation of NTE. The 18S ribosomal RNA is not affected by TIGR/MYOC expression (Fig 4). Thus, regulation of transcription of NTE in human eyes exposed to TIGR/MYOC is affected in a similar manner as transcription of its Drosophila homolog in transgenic flies. These observations support our assessment that targeted overexpression of glaucoma-associated proteins in transgenic flies can serve as an advantageous system for the discovery of genes that are modulated in response to elevated pressure in the eye and may ultimately contribute to the development of glaucoma.
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| DISCUSSION |
|---|
TIGR/MYOC-induced fluid discharge in the Drosophila eye:
Research on the pathogenesis of glaucoma has been hampered by the lack of a suitable animal model. Only a few genes that are linked to glaucoma, including TIGR/MYOC (![]()
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TIGR/MYOC was discovered as a secreted protein overexpressed in response to dexamethasone in the human trabecular meshwork (![]()
40% of individuals (![]()
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Although we cannot measure intraocular pressure directly in the Drosophila eye, the most parsimonious explanation for the observed TIGR/MYOC-induced phenotype is an increase in ocular pressure, which can be relieved by extrusion of fluid. This could be due simply to the accumulation of extracellular material in the ommatidia. However, even if the cause for the phenotype observed in Drosophila is different from that responsible for the increased intraocular pressure observed in humans, it remains intriguing as it mimics some of its characteristics, such as the enlargement of eye structures and effect on fluid outflow.
The expression of the distinct phenotype in flies induced by overexpression of a glaucoma-linked gene may also result from the up- or downregulation of other genes and may help reveal hidden mechanisms relevant to the physiology of aqueous humor outflow and the development of glaucoma in humans. Thus, similar to the transcriptional alterations observed in the Drosophila eye, overexpression of TIGR/MYOC could modulate the expression of other genes to induce discharge of extra fluid in the human trabecular meshwork that could facilitate the flow of aqueous humor through Schlemm's canal.
Transcriptional profiling in the Drosophila eye as a discovery tool for genes that contribute to glaucoma:
Our transcriptional profiling studies applied stringent criteria for the identification of up- or downregulated gene products as a consequence of TIGR/MYOC expression. Whereas our analysis limits the likelihood of false positives, it also prevents detection of subtle effects that could have important consequences. Furthermore, post-translational modifications can critically affect the phenotype, but would go undetected.
Nonetheless, we were able to identify 50 modulated transcripts, including several gene products previously implicated in glaucoma. Linkage studies of Saudi Arabian (![]()
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Whereas homologs of a subset of the up- or downregulated genes we identified in TIGR/MYOC-overexpressing flies may contribute to increased intraocular pressure in the human eye, clearly not all of them are relevant to human disease genes or have human homologs (e.g., salivary gland protein 8, Table 1). Ultimate validation of transcription profiling in Drosophila as a model for human disease requires demonstrating that candidate disease genes identified in Drosophila indeed have relevant human orthologs. Therefore, we performed parallel studies between Drosophila as a candidate gene discovery system and perfused postmortem human eyes as a validation system. We focused on the neurodegeneration gene swiss cheese (![]()
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| ACKNOWLEDGMENTS |
|---|
We thank J. Mahaffey for providing facilities for the generation of transgenic flies, E. Johannes for assistance with microscopy, M. Mattmüller for assistance with histology, and R. Wang and L. Rowlette for technical assistance. This work was supported by grants from the Glaucoma Research Foundation, the Research to Prevent Blindness Foundation (RPB), and the W. M. Keck Foundation and by National Institutes of Health grants GM-59469 (to R.R.H.A.), EY11906 and EY13126 (to T.B.), and GM-45146 and GM-45344 (to T.F.C.M.). T. Borrás is a Jules and Doris Stein RPB Professor Awardee.
Manuscript received August 20, 2002; Accepted for publication November 4, 2002.
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) rRNA transcripts in the AdhTIG3-treated over AdNull control eyes (n = 9). (B) The ratio of expression values of the NTE () and 18S (