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In Candida albicans, White-Opaque Switchers Are Homozygous for Mating Type
Shawn R. Lockharta, Claude Pujola, Karla J. Danielsa, Matthew G. Millerc, Alexander D. Johnsonc, Michael A. Pfallerb, and David R. Sollaa Department of Biological Sciences, The University of Iowa, Iowa City, Iowa 52242
b Department of Pathology, The University of Iowa, Iowa City, Iowa 52242
c Department of Microbiology and Immunology and Department of Biochemistry and Biophysics, University of California, San Francisco, California 94122
Corresponding author: David R. Soll, Department of Biological Sciences, The University of Iowa, Iowa City, IA 52242., david-soll{at}uiowa.edu (E-mail)
Communicating editor: A. P. MITCHELL
| ABSTRACT |
|---|
The relationship between the configuration of the mating type locus (MTL) and white-opaque switching in Candida albicans has been examined. Seven genetically unrelated clinical isolates selected for their capacity to undergo the white-opaque transition all proved to be homozygous at the MTL locus, either MTLa or MTL
. In an analysis of the allelism of 220 clinical isolates representing the five major clades of C. albicans, 3.2% were homozygous and 96.8% were heterozygous at the MTL locus. Of the seven identified MTL homozygotes, five underwent the white-opaque transition. Of 20 randomly selected MTL heterozygotes, 18 did not undergo the white-opaque transition. The two that did were found to become MTL homozygous at very high frequency before undergoing white-opaque switching. Our results demonstrate that only MTL homozygotes undergo the white-opaque transition, that MTL heterozygotes that become homozygous at high frequency exist, and that the generation of MTL homozygotes and the white-opaque transition occur in isolates in different genetic clades of C. albicans. Our results demonstrate that mating-competent strains of C. albicans exist naturally in patient populations and suggest that mating may play a role in the genesis of diversity in this pernicious fungal pathogen.
CANDIDA albicans is carried in the microflora of a majority of healthy individuals as a benign commensal (![]()
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10-3, and the white and opaque phenotypes are typically passed on to progeny cells. The white-opaque transition is spontaneous and reversible and is accompanied by the differential expression of white phase-specific and opaque-phase-specific genes (![]()
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1, and MAT
2 of Saccharomyces cerevisiae. In the strain they analyzed (CAI4, a common patient-derived laboratory strain), the MTL locus was heterozygous, containing MTLa1 on one chromosome and MTL
1 and MTL
2 on the homolog. Subsequently, ![]()
strains (a/- and
/-, respectively) mated in vivo at very low estimated frequencies, and ![]()
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We first identified six new genetically unrelated white-opaque switchers in an epidemiological collection of >70 independent C. albicans isolates collected worldwide (![]()
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| MATERIALS AND METHODS |
|---|
Maintenance of stock cultures:
All yeast cultures were clonally derived from primary clinical isolates. They were stored in sterile water at 25°, in 20% glycerol at -80°, or on agar slants containing supplemented Lee's medium (![]()
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50 colonies per 85-mm plate) and the plates were wrapped with parafilm and incubated at 25° for 14 days. In some experiments cells were plated on YPD agar (2% dextrose, 2% Bacto-peptone, 1% yeast extract, and 2% agar) and incubated at 25°.
DNA fingerprinting:
Select isolates were DNA fingerprinted by Southern blot hybridization with the complex DNA fingerprinting probe Ca3 (![]()
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, where E is the number of bands common between patterns A and B, a is the number of bands in pattern A not in pattern B, and b is the number of bands in pattern B not in pattern A. An SAB of 0.0 indicates patterns with no common bands, while an SAB of 1.00 indicates identical patterns. Values ranging from 0.01 to 0.99 reflect increasing levels of similarity. Dendrograms were generated on the basis of SAB values using the unweighted pair-group method using arithmetic average (![]()
PCR analysis of the MTL loci:
Yeast genomic DNA (
1 ng) prepared by the method of ![]()
using the primers MTL
longF and MTL
longR (Table 1). These primers generated whole open reading frames. This was confirmed for MTLa using the primers OBPaF and OBPaR and for MTL
using the primers OBP
F and OBP
R (Table 1). These primers amplified the gene OBP, for which heterozygotic alleles are located in the MTLa and MTL
loci. For select MTL homozygotes, the primers MTLa1F and MTLa1R and the primers MTL
2F and MTL
2R were used to amplify shorter regions of the MTLa1 and MTL
2 genes, respectively (Table 1). These latter amplifications were performed to test whether there were point mutations or small deletions in the preceding amplified genes, which may have prevented amplification.
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Scanning electron microscopy:
Cells were grown at 25° in supplemented Lee's medium. Cells were harvested in late log phase, washed twice in double-distilled water and fixed in 2.5% (wt/vol) glutaraldehyde in 0.1 M cacodylate buffer for 1 hr. Cells were postfixed in 1% osmium tetroxide in 0.1 M cacodylate buffer for 50 min. After postfixation, cells were washed three times in 0.1 M cacodylate buffer and treated with 6% thiocarbohydrazide at room temperature. A second round of fixation in 1% osmium tetroxide was performed to enhance cell surface architecture. Cells were again rinsed in double-distilled water, dehydrated through increasing concentrations of ethanol solution, chemically dried in hexamethyldisilazane (Polysciences, Warrington, PA), mounted on aluminum stubs, and sputter-coated with gold palladium. Cells were imaged with a Hitachi S-4000 scanning electron microscope (Hitachi, San Diego).
| RESULTS |
|---|
White-opaque switchers are homozygous at the mating type locus:
To test the allelism of white-opaque switchers at the MTL locus, >70 isolates from several epidemiological studies (![]()
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10-3, and clonal opaque phase populations accumulated white phase cells at a frequency of 10-3. The one exception was strain P37035. Clonal populations of this strain emanating from the opaque phase contained predominantly white phase cells after 5 days of colony development at 25°, suggesting that in relation to the other strains, the frequency of the transition in the opaque to white direction in this strain was very high. Opaque phase cells of all six newly selected white-opaque phase switchers underwent mass conversion to the white phase when shifted from 25° to 42° (data not shown) in a manner similar to that of strain WO-1 (![]()
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To test whether WO-1 and the six new white-opaque switching strains were homozygous at the mating type locus, the polymerase chain reaction was used to amplify the MTL
2 and MTLa1 genes. DNA amplification of control strain 3153A, which does not undergo the white-opaque transition (![]()
2, but not both (Fig 3). In strains WO-1, 19F, P37035, and P78048, only MTL
was detected, while in strains L26, 12C, and P37005, only MTLa1 was detected (Fig 3). All isolates were also analyzed for the presence of the gene OBP, which is present in both the MTLa and the MTL
locus, but differs enough between MTLa and MTL
(![]()
allele segregated with the MTL
2 gene (strains WO-1, 19F, P37035, and P78048; data not shown), confirming that strains undergoing the white-opaque transition contained either MTLa or MTL
, but not both. We could not, however, determine from these PCR assays whether WO-1 and the six additional strains possessed one copy of the mating type locus MTLa or MTL
or contained two copies of one or the other. A deletion analysis of strain WO-1 indicated the presence of two MTL
loci (data not shown), which favors a mechanism in which MTL becomes homozygous at the two alleles rather than a mechanism in which one allele is lost. On the basis of this result, we will refer to a or
strains as "MTL homozygous" for simplicity, keeping in mind that we have not distinguished between homozygosity and hemizygosity, except in the case of strain WO-1.
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Switching, homozygosity, and genetic relatedness:
In analyses of population structure using DNA fingerprinting with the complex probe Ca3, it has been demonstrated that C. albicans isolates cluster into five major genetically unrelated groups: I, II, III, SA, and E (![]()
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strains were present in clade I (Fig 5). These results demonstrate that (1) white-opaque switching occurs in isolates from different clades, (2) MTL homozygotes occur in different clades, and (3) homozygous MTLa and MTL
strains can occur in the same clade.
|
|
Selected MTL homozygotes undergo the white-opaque transition:
Demonstration that WO-1 and the six additional strains selected for the white-opaque transition were homozygous at the mating type locus suggests that all or most switchers will prove to be MTL homozygous. However, this does not prove the converse, namely that all MTL homozygotes are white-opaque switchers. To test the latter, we used PCR amplification to assess allelism at the mating type loci of 220 clinical isolates and then tested all identified MTL homozygotes and randomly chosen MTL heterozygotes for the white-opaque transition. Fifty of the tested isolates were from group I, 50 from group II, 50 from group III, 50 from group SA, and 20 from group E. Of the 220 tested isolates, 7 were MTL homozygotes (3.2%), 3 were MTLa strains, and 4 were MTL
strains (Table 2); 213 isolates (96.8%) were MTL heterozygous (Table 2). Homozygous MTLa strains were identified in groups I, II, and SA, and homozygous MTL
strains were identified in groups II and SA (Table 3). No MTL homozygous strains were identified in groups III and E. Of the 7 identified MTL homozygotes, 5 (GC75, OKP90, P60, P57072, and P78048) underwent the white-opaque transition (Table 2). One was an MTL
from group I, 2 were MTLa's from group II, 1 was an MTL
from group II, and 1 was an MTL
from group SA (Table 2). One MTLa homozygote from group SA and 1 MTL
homozygote from group SA formed colonies that stained pink on phloxine B plates, a color midway between white and opaque (Table 2). The colony morphologies of these two strains were irregular or wrinkled, and the cell population contained pseudohyphae and budding cells, but no opaque cells. No white-opaque switching was evident in these two strains.
To test whether MTL heterozygotes (MTLa/MTL
) switched,
250 cells of each of 20 randomly selected MTL heterozygotes were grown on agar medium containing phloxine B for 14 days at 25° to allow formation of opaque sectors, the result of switching. Of the 20 isolates, 18 did not undergo the white-opaque transition. Because we found no opaque colonies out of the 250 colonies plated, the estimated switching frequency would be <4 x 10-3. When it is considered that a switching strain generates two to four sectors per colony after 14 days of incubation and that no sectors were detected in the 18 isolates that did not switch, the estimated switching frequency would be reduced to <4 x 10-6. Two isolates (P80001 and P75063) did, however, form white and opaque colonies and sectors. One isolate was from group III, and one was from group SA (Table 3). When cells from opaque colonies of the two isolates that switched were analyzed for MTL allelism, they proved to be MTL homozygous, indicating that the original MTL heterozygous clones had become homozygous at the MTL locus. A lineage of one of these isolates, P75063, is presented in Fig 6A. The original clinical isolate was cloned prior to storage in water. It was then subcultured as a patch and analyzed for mating type. It was demonstrated to be heterozygous for the MTL locus (Fig 6B). Cells plated from this patch formed white and opaque phase colonies on agar containing phloxine B. Eight individual white phase colonies (clones) and four individual opaque phase colonies (clones) were in turn picked and analyzed for mating type allelism and switching. Seven of the eight white colonies proved to be heterozygous (MTLa/MTL
) and one homozygous (MTLa) for MTL, while all four of the opaque colonies were homozygous (MTLa; Fig 6A). When cells from 13 white colonies (W1-1 to -13) and 11 opaque colonies (W1-14 to -24) of original clone W1 were in turn analyzed for mating type and switching, the former proved to be heterozygous (MTLa/MTL
) and to exhibit the white phenotype only, while the latter proved to be homozygous (MTLa) and capable of switching (Fig 6A). To be sure that all tested clones emanated from strain P75063, one white MTL heterozygous clone and three MTL homozygous clones (one white and two opaque) were DNA fingerprinted with the species-specific probe Ca3. All four exhibited similar DNA fingerprints (Fig 6C), demonstrating that they were all derived from the same progenitor. These results demonstrate that while a majority (90%) of MTL heterozygotes do not normally undergo the white-opaque transition, a minority (10%) are capable of doing so. These latter strains appear to become homozygous at high frequency, again supporting the idea that only cells homozygous for the MTL locus can undergo the white-opaque transition.
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| DISCUSSION |
|---|
We have found that the original white-opaque switching strain WO-1 and six additional clinical strains that were selected for their capacity to undergo the white-opaque transition were homozygous at the mating type locus, supporting the suggestion that all strains that undergo the white-opaque transition are homozygous at the mating type locus. Since our results were obtained with naturally occurring clinical isolates, they complement experiments carried out using a genetically manipulated laboratory strain demonstrating that the MTL locus controls white-opaque switching (![]()
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homozygotes occurred in the same clade. These results demonstrate that strains in different clades can undergo the white-opaque transition and should further dispel past reservations that the white-opaque transition was unique to strain WO-1.
Although our analysis of MTL allelism of the seven selected white-opaque switchers supported the conclusion that all white-opaque switchers are homozygous for the mating type locus, it did not prove the converse, namely that all MTL homozygotes undergo the white-opaque transition. To examine the latter suggestion, we analyzed the MTL allelism of 220 independent C. albicans isolates and tested all identified MTL homozygotes for the white-opaque transition. Of the tested collection, 96.8% were heterozygous and 3.2% homozygous, the latter including both MTLa strains and MTL
strains. Of the seven identified MTL homozygotes, five underwent the white-opaque transition. No MTL homozygotes were obtained from group III or group E, but because the general frequency of MTL homozygotes among the entire collection of isolates was so low, no conclusion can be made on the absence of MTL homozygotes in a particular clade. In fact, one of the MTL heterozygous isolates that spontaneously became homozygous at high frequency (P80001) was from group III. What is noteworthy, however, is the apparent absence of white-opaque switching in two SA isolates, one MTLa and one MTL
. These two isolates formed irregular wrinkled colonies, which contained high levels of pseudohyphae. It is not clear whether these strains did not undergo the white-opaque transition or whether the white-opaque transition was masked by expression of a variant phenotype in an alternative phenotypic switching system not under the regulation of the MTL, in this case the irregular wrinkle phenotype in the 3153A switching system (![]()
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Of 20 randomly selected MTL heterozygotes, 18 did not undergo the white-opaque transition. Two MTL heterozygotes, however, switched. An analysis of white and opaque colonies obtained from these strains revealed that they spontaneously generated MTL homozygotes at high frequency, which in turn underwent the white-opaque transition. In each of these strains, only MTLa or MTL
colonies were exclusively generated, suggesting the presence of a recessive lethal allele on the homologous chromosome (![]()
Our results, therefore, generalize the original finding by ![]()
, but not both, have the ability to mate (![]()
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3% of clinical isolates of C. albicans are homozygous at the MTL locus and carry out white-opaque switching. Moreover, we have identified strains of C. albicans that are MTLa/MTL
heterozygotes, but generate MTLa or MTL
homozygous strains at very high frequency. All of these results suggest that mating-competent strains of C. albicans exist naturally in patient populations, and preliminary results indicate that a majority are capable of mating (S. R. LOCKHART and D. R. SOLL, unpublished observations). Studies of population structure suggest that although reproduction is primarily clonal, recombination does occur at low frequency (![]()
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| ACKNOWLEDGMENTS |
|---|
The authors are grateful to T. Srikantha and R. Zhao for valuable suggestions. This research was supported by National Institutes of Health (NIH) grant AI2392 to D.R.S. and NIH grant GM-37049 and a Burroughs Wellcome Merit Award to A.D.J.
Manuscript received May 29, 2002; Accepted for publication August 13, 2002.
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M. E. Logue, S. Wong, K. H. Wolfe, and G. Butler A Genome Sequence Survey Shows that the Pathogenic Yeast Candida parapsilosis Has a Defective MTLa1 Allele at Its Mating Type Locus Eukaryot. Cell, June 1, 2005; 4(6): 1009 - 1017. [Abstract] [Full Text] [PDF] |
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S. R. Lockhart, W. Wu, J. B. Radke, R. Zhao, and D. R. Soll Increased Virulence and Competitive Advantage of a/{alpha} Over a/a or {alpha}/{alpha} Offspring Conserves the Mating System of Candida albicans Genetics, April 1, 2005; 169(4): 1883 - 1890. [Abstract] [Full Text] [PDF] |












