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Quantitative Trait Loci for the Monoamine-Related Traits Heart Rate and Headless Behavior in Drosophila melanogaster
Kristie Ashtona, Ana Patricia Wagonera, Roland Carrilloa, and Greg Gibsonaa Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695-7614
Corresponding author: Greg Gibson, Department of Genetics, Gardner Hall, North Carolina State University, Raleigh, NC 27695-7614., ggibson{at}unity.ncsu.edu (E-mail)
Communicating editor: M. W. FELDMAN
| ABSTRACT |
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Drosophila melanogaster appears to be well suited as a model organism for quantitative pharmacogenetic analysis. A genome-wide deficiency screen for haploinsufficient effects on prepupal heart rate identified nine regions of the genome that significantly reduce (five deficiencies) or increase (four deficiencies) heart rate across a range of genetic backgrounds. Candidate genes include several neurotransmitter receptor loci, particularly monoamine receptors, consistent with results of prior pharmacological manipulations of heart rate, as well as genes associated with paralytic phenotypes. Significant genetic variation is also shown to exist for a suite of four autonomic behaviors that are exhibited spontaneously upon decapitation, namely, grooming, grasping, righting, and quivering. Overall activity levels are increased by application of particular concentrations of the drugs octopamine and nicotine, but due to high environmental variance both within and among replicate vials, the significance of genetic variation among wild-type lines for response to the drugs is difficult to establish. An interval mapping design was also used to map two or three QTL for each behavioral trait in a set of recombinant inbred lines derived from the laboratory stocks Oregon-R and 2b.
MOLECULAR dissection of complex multifactorial traits is emerging as one of the major challenges for geneticists in the next few decades. Behavior, cardiovascular disease, and cancer susceptibility are three prominent human examples, genetic analysis of which is being driven by advances in statistical and computational methods as well as the advent of high-throughput genotyping techniques (![]()
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Drosophila melanogaster presents numerous advantages for quantitative genetic analysis, as evidenced by the contributions made toward our understanding of the molecular basis of variation in complex traits such as central metabolism and bristle number (![]()
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Biogenic monoamines are a class of neurotransmitter with highly conserved roles in synaptic transmission in all animals (![]()
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The Drosophila dorsal vessel is homologous to the vertebrate heart, as shown by conservation of developmental genetic mechanisms (![]()
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Genetic approaches have been applied to the dissection of numerous behaviors in flies, most extensively of learning (![]()
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Here we show that there is actually genetic variation among wild-type lines, marginally for the response to drug application to headless flies, but unambiguously in the level and types of spontaneous activities immediately following decapitation. These include grooming, quivering, grasping, and the ability to self-right. Results are presented that imply that quantitative trait loci for autonomic behaviors can be mapped, but methodological constraints due to the difficulty in controlling the genetic background are discussed. It is concluded that Drosophila has enormous potential for genetic dissection of neurotransmitter-related behaviors, as long as effects are tested across multiple genetic backgrounds. As in other organisms, candidate gene approaches may be more enlightening than genome scans.
| MATERIALS AND METHODS |
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Flies and behavior assays:
All stocks were obtained from the Bloomington Stock Center (full genotypes are available from FlyBase or by request). The green balancers (![]()
Heart rate assays were performed as described (![]()
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Headless behavior assays were performed in a growth room maintained at 25° by tipping up to 50 flies into an empty vial, which was placed on ice for 35 min to lightly anaesthetize the flies. These were then knocked onto the base of a dissecting microscope in pairs, and a single cut at the neck was made with a pair of microscissors until 5 flies of each sex were beheaded. As they awoke over the next 23 min, headless flies were nudged into an upright position and allowed to stand and recover for a further 2 min. The four behaviors were assayed over the next 5 min, 1 fly at a time. Subsequently, a droplet of 10 mM octopamine [Sigma (St. Louis) O0250] or 0.3% nicotine (Sigma N0267) in 10 mM sodium phosphate buffer (pH 6.0) was applied to the severed neck of each fly with a micropipette for 5 sec, and the enhanced activity was scored over the succeeding 15 sec.
Statistics:
Analysis of variance was performed using PROC GLM in SAS (SAS INSTITUTE 1990). For heart rate, the model was y = B + G + B x G + E, where B refers to the wild-type background, G the genotype (deficiency or green balancer), and E the error term. All effects were fixed, since the backgrounds were chosen a priori to cover the range of wild-type values, and the crosses can be replicated at will. Replication was not included as a separate term since individuals were taken from different numbers of crosses according to the fecundity of each cross. Consequently, the E mean square was used as the error term for all three effect tests.
For headless behaviors, the model was y = L + V(L) + E, where L refers to the isofemale line (derived from a collection of Kenyan stocks) and V(L) is the replicate vial within line term; or, simply, y = L + E, where the proportion of individuals within a vial that showed each individual behavior was the data point (Table 3). A randomized block design was employed such that day effects were not confounded with lines (no line was scored more than once on any given day, and different combinations of lines were scored each day), but the design was not completely orthogonal since only a subset of lines were scored each day. Both the line and vial effects were random variables. Arcsin transformation of proportion values did not affect the significance values for any of the traits. Variance components were calculated using PROC VARCOMP, and broad sense heritability was estimated simply as VLine/VTotal (![]()
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Interval mapping:
The set of 94 recombinant inbred lines derived from the cross of Oregon-R and Russian 2b (![]()
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| RESULTS |
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Deficiency screen for modifiers of heart rate:
An efficient method for identifying mutations that have a subtle or quantitative effect on a trait is to screen a panel of deficiency-bearing chromosomes for haploinsufficient phenotypes. A kit of 134 deficiency chromosomes that collectively cover
70% of the D. melanogaster genome was used to screen for hemizygotes that have reduced or increased heart rate relative to the remainder of the sample. Most of the deficiencies remove part of a cytological band on polytene chromosome spreads, which corresponds to <1% of the genome, but in some cases may include up to 100 genes, at least 1 of which is homozygous lethal. The chromosomes are maintained over a balancer, and pupae are assumed to be heterozygous for the balancer and deficiency-bearing chromosomes in an inbred background or, in the case of X-linked deficiencies, to be either heterozygous females or males carrying the balancer. Many of the deficiencies overlap slightly, but most regions of the genome were only included in one deficiency.
Heart rates were initially scored in five pupae with each chromsome taken from at least two separate bottle stocks. For the more extreme chromosomes, five more pupae were measured, but no qualitative changes in mean rate were observed. Table 1 shows the complete list of chromosomes, the extent of each deficiency, the mean prepupal heart rate, and standard deviation of the rate between individuals. The results are presented graphically in Fig 1, which shows that there is a continuous distribution of rates between 2 and 3 beats per second, with a half dozen lines on either side of these values that are qualitatively extreme.
The average rate per chromosome for the entire set of deficiencies was 2.52 beats per second, with a standard deviation of 0.37 and a range of 1.88 beats per second, very similar to the values we observed for a set of highly inbred wild-type lines (![]()
Confirmation of deficiency effects in different genetic backgrounds:
Since all but a few of the chromosomes have mean heart rates within two standard deviation units of the mean, it is possible that the apparent haploinsufficient phenotypes of the more extreme chromosomes might be due to segregating "wild-type" polymorphism rather than the deficiencies per se. In general, each deficiency was isolated in different laboratories and therefore in different genetic backgrounds, and several different balancers were used in the stocks. To reduce these sources of variation, 15 chromosomes were retested in up to six different wild-type backgrounds and with just one second chromosome and one third chromosome balancer. The retested chromosomes were selected from the seven highest and seven lowest heart rates in the initial screen and supplemented with 6 other randomly selected moderately extreme chromosomes; 5 of these 20 chromosomes were subviable in several of the wild-type backgrounds and so were discounted.
Haploinsufficient effects were tested in these crosses as a significant main effect of genotype in a two-way analysis of variance with background as a cross-classified fixed effect. The six near-isogenic wild-type backgrounds were chosen to cover the full range of wild-type values (see MATERIALS AND METHODS). As balancers, green fluorescent protein (GFP) expressing FM7, CyO, and TM3 derivatives (![]()
Of the 15 chromosomes that were retested, 6 were expected to have high heart rates, 7 low, and 2 intermediate on the basis of the initial observations, and all but 2 (chromosomes 949 and 2479) showed a difference across genetic backgrounds in the expected direction (Table 2). This implies that the deficiency-bearing chromosomes are likely to have contributed at least in part to the extreme values in 11 of the 13 original measures. However, the difference in mean heart rate between deficiency and balancer siblings was significant for only three of the high lines and four of the low lines, indicating that variation unrelated to the deficiencies can also be responsible for extreme values in laboratory stocks.
The background by genotype interaction term in the ANOVAs is also of interest, as significant values are indicative of dominance or epistatic components of genotypic variance (![]()
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Genetic variation for headless behavior:
Given that heart rate is physiologically regulated by neurotransmitters, we were interested to see whether other behavioral traits might also display high levels of genetic variation. A promising candidate trait was headless behavior, which has been shown to be elicited by application of each of the monoamines, dopamine, serotonin, and octopamine (![]()
Genetic differences among 12 Kenyan isofemale lines for the four headless behaviors are plotted in Fig 4A. Since the scores are dichotomous (yes/no), differences among lines of the proportion of 10 flies randomly chosen from each of six replicate vials that displayed each behavior were tested by ANOVA. With the exception of male abdominal quivering, differences among lines were highly significant (Table 3), which allowed estimates of the heritability of each headless behavior to be made from the ratio of genetic to phenotypic variance in the sample. Values of 0.36 for hindleg grooming, 0.60 for grasping, and 0.41 for righting should be reduced by up to a half to obtain more realistic estimates of the proportion of variance that is due to genetic differences, since the wild-type lines are inbred relative to wild-type flies (![]()
Furthermore, there may be genetic variation for the response to application of octopamine and nicotine. The effects of the three monoamines were tested at 10 mM concentration. Octopamine was found to induce considerably more activity than dopamine and slightly more activity than serotonin (data not shown). The frequencies of righting, grasping, and grooming were not greatly affected by octopamine, which instead elicits several new responses including walking (generally in a circle), fluttering of the wings, and even flight. Nicotine is "lethal" to beheaded flies (they cease all activity) at 0.5% concentration, consistent with its common usage as an insecticide, but at 0.3% elicits a range of responses similar to octopamine, consistent with its reputation as a stimulant.
Arbitrary scales were developed to characterize the general activity of beheaded flies before and after drug treatment (see legend to Fig 4). The significance of among-line differences is very much a function of the assumptions of the analysis of variance. Ignoring replicate vial effects, that is, pooling activities from six vials into a single class, results in highly significant strain differences. A more appropriate analysis is to use the vial-within-line replication term as the denominator in F-ratio tests. When this is done, among-vial differences for these behavioral traits become marginal or disappear (Table 3). The reasons for this, as shown by leverage plots in Fig 4B, are that a greater proportion of the variation is among vials within lines after application of the drugs and that there is less among-line variation. Since our initial results were performed with isofemale lines, a separate set of 12 near-isogenic wild-type lines generated by 10 generations of repeated sib-pair mating was retested for the response to octopamine: these should have reduced within-line variance relative to isofemales. However, as reported in Table 3 and Fig 4B, the among-vial variance continues to affect the significance of between-line differences. Our scoring scales are not exactly equivalent for overall activity before and after each drug treatment, so it is not formally appropriate to estimate the correlation between scores, but the data suggest that these are somewhat positively correlated. Very large numbers of replicates would be required to establish the significance of genetic differences either in activity after, or in response to, drug application. In contrast to the results of ![]()
Interval mapping of QTL for headless behaviors:
An alternative method for detecting quantitative trait loci is interval mapping in defined crosses derived from two phenotypically divergent parental lines. We have used this technique to demonstrate the existence of two or three loci that affect each of the four headless behaviors in a set of 74 recombinant inbred lines (RILs) derived by repeated sib-mating from the F2 of a cross between the standard laboratory strain Oregon-R and a Russian strain, 2b (![]()
QTL were mapped with QTL cartographer (![]()
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The major QTL effects for both sexes combined are shown as leverage plots in Fig 5, which allow visual comparison of residual effects against the main effect of genotype. For example, in Fig 5A, hindleg grooming can be seen to be influenced by two additive loci for which the 2b allele increases the autonomic activity level. Slightly fewer than half of the flies homozygous for Oregon-R alleles near both 3E and 98A groom with their hindlegs, whereas approaching 70% of flies homozygous for both Russian 2b alleles do so, and flies homozygous for the alternate alleles show intermediate activity. (Heterozygous effects are not measured from inbred RILs with this design.) The large residual variance within genotype classes is reflected in the observation that the two-locus model accounts for only 13% of the variance among RIL means. By contrast, a two-locus model (87B and 96A) accounts for 25% of the among-RIL variance for self-righting, and in this case it is the Oregon-R alleles that increase the activity. For grasping, a three-locus model (61A, 65D, and 87B) explains 29% of the variance, but the effect of one QTL (61A) is in the opposite direction to that of the other two loci, and the peak near 65D may represent more than one QTL since it is quite broad and displaced by the equivalent of one cytological band between the two sexes. For quivering, there is low support for either QTL, in part because relatively few lines show the trait at a moderate or high frequency and hence <10% of the variance among lines is explained. The apparent synergistic interaction between the 2b allele near 14C and the Oregon-R allele near 87B is also seen to be due to just two RIL and may thus represent a sampling artifact.
| DISCUSSION |
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Quantitative genetic analysis of behavioral traits in Drosophila:
Mindful of the increasing interest in quantitative behavioral genetic research, we present results that encourage further development of D. melanogaster as a model organism in this field. There is clearly extensive genetic variation for two groups of traits that are modulated by neurotransmitters in the fly, namely, heart rate and a group of autonomic behaviors that are exhibited upon beheading. Further, the effects of individual chromosomes can be distinguished readily, and all indications are that it should be possible to perform association tests to characterize quantitative effects of individual nucleotide polymorphisms. At least for a subset of deficiencies, quantitative complementation tests yield significant interaction terms, suggesting that fine structure mapping using overlapping deficiencies can be used to resolve the location of QTL for heart rate to the level of candidate genes (![]()
However, our results also highlight several reasons for caution in the interpretation of behavioral genetic results. First, the wide range of wild-type phenotypes for both heart rate and headless behavior implies that extreme trait values cannot be attributed to a known mutation present in a stock simply on the basis that the mean trait value of the stock differs significantly from that of one or two common wild-type laboratory stocks. Six of the 11 extreme deficiencies that we retested across a variety of different genetic backgrounds either failed to show a consistent effect on heart rate or in two cases showed an effect in the direction opposite to that detected in the original stock. Consequently, the effects of putative behavioral mutants should be reconfirmed across a range of genetic backgrounds and, where possible, with two or more different mutations generated on different chromosomes. Many intervals of the fly genome are covered by overlapping deficiencies, but it should be borne in mind that the remainder of the chromosome on which these occur may also differ, so the most thorough experimental design will also involve laborious introgression of the deficiencies onto a common chromosomal background.
Second, environmental effects, including differences among vials, can be particularly strong for behavioral traits. This is most apparent for dichotomous traits such as grooming and grasping, for which it is quite common for one or two vials to contradict the trend observed in four or five other vials of the same cross. Such differences occur in stocks reared at constant temperature and humidity and scored at the same time of day and are not obviously related to fluctuation in barometric pressure (results not shown) and so may be indicative of threshold responses to microenvironmental fluctuation. In any case, a consequence is that interpretation of genetic effects is easily skewed by the mode of statistical analysis. The most robust practice is to include vial effectsas well as other sources of environmental variance such as batch effects where replicates are performed at different timesas terms in the analysis of variance.
Third, detection of interaction effects is problematic. Interaction terms are often the most interesting from a quantitative genetic perspective, because they establish the reality of epistatic effects and of "sensitivity" to drugs and other environmental factors. It is tempting to conclude from the observation that a set of lines are statistically similar under one set of circumstances but different under another (say, before and after exposure to a drug) that there is genetic variance for sensitivity to the drug (for example, ![]()
Role of neurotransmitters in behavioral variation:
Our screen for haploinsufficient effects on heart rate uncovered nine deficiency-bearing chromosomes that significantly increase or reduce prepupal heart rate across genetic backgrounds. Six of the deficiencies include good candidate genes listed in FlyBase, namely, Synaptobrevin [Df(2R)Stan2], Acer [which encodes a dipeptidase that is expressed in the developing heart, ![]()
Several classes of genes may be predicted to affect heart rate, including mutations of the paralytic class, potassium and calcium channels, various classes of neurotransmitter receptors, and enzymes involved in neurotransmitter metabolism. By chance, most channel genes were not included in the deficiency kit, but previous studies have confirmed that the homologue of the human long-QT syndrome potassium channel gene, eag, is required for normal heart rate (![]()
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It is not, though, obvious that this effect is in the expected direction. Mutations in the Ddc gene, which encodes the enzyme that catalyzes the final step in dopamine biosynthesis, seem to reduce prepupal heart rate (![]()
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No firm conclusions about the genetic architecture of autonomic behaviors should be drawn from the QTL mapping based on the relatively small sample of 74 RIL. It is clear that individual gene effects are small relative to environmental sources of variation, yet the analysis does suggest that oligogenic contributions can be measured. It is an open question whether dissection of complex behaviors may benefit from reduction of the overall activity down to subcomponents, such as quivering and grooming, or potentially from physiological properties relating to membrane potentials (![]()
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Genetic effects of polymorphisms and mutations affecting neurotransmitter biosynthesis and uptake are likely to be a complex function of numerous parameters. Little is known about the mutational target size for behavioral traits, the distribution and functional significance of molecular variation in neurotransmitter receptors and other behavioral loci, or the degree of epistatic and genotype-by-environment interaction for behavioral traits (![]()
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| ACKNOWLEDGMENTS |
|---|
We gratefully acknowledge the assistance of Amanda Moehring, Salam Bidwan, Radhika Aggarwal, and Elizabeth Sall at various stages of the experiments, and Trudy Mackay and members of her group for helpful discussion and for supplying the deficiency kit. This work was supported by grants to G.G. from the North Carolina Affiliate of the American Heart Association (B98418N) and the David and Lucille Packard Foundation. R.C. was supported by the W. M. Keck Program in Behavioral Biology at North Carolina State University.
Manuscript received February 4, 2000; Accepted for publication October 2, 2000.
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- Articles by Gibson, G.



, A1; x, A8;
, A20; +, W6;
, W11;
, W14). For each of the four deficiencies, different wild-type lines are responsible for the interaction effects, suggesting that different segregating alleles contribute to the dominance or epistatic interaction with each deficiency.


