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New Insights on Homology-Dependent Silencing of I Factor Activity by Transgenes Containing ORF1 in Drosophila melanogaster
Sophie Malinskya, Alain Buchetona, and Isabelle Busseauaa Institut de Génétique Humaine, CNRS, 34396 Montpellier Cedex 05, France
Corresponding author: Isabelle Busseau, IGH-CNRS, 141 rue de la Cardonille, 34396 Montpellier Cedex 05, France., busseau{at}igh.cnrs.fr (E-mail)
Communicating editor: J. A. BIRCHLER
| ABSTRACT |
|---|
I factors in Drosophila melanogaster are non-LTR retrotransposons that transpose at very high frequencies in the germ line of females resulting from crosses between reactive females (devoid of active I factors) and inducer males (containing active I factors). Constructs containing I factor ORF1 under the control of the hsp70 promoter repress I factor activity. This repressor effect is maternally transmitted and increases with the transgene copy number. It is irrespective of either frame integrity or transcriptional orientation of ORF1, suggesting the involvement of a homology-dependent trans-silencing mechanism. A promoterless transgene displays no repression. The effect of constructs in which ORF1 is controlled by the hsp70 promoter does not depend upon heat-shock treatments. No effect of ORF1 is detected when it is controlled by the I factor promoter. We discuss the relevance of the described regulation to the repression of I factors in I strains.
I factors in Drosophila melanogaster are non-long terminal repeat (LTR) retrotransposons of particular interest because high frequencies of transposition can be induced experimentally, resulting in the phenomenon of IR hybrid dysgenesis (![]()
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In addition to high levels of transposition occurring in their germ line, SF females display a characteristic syndrome of sterility: a proportion of the eggs they lay fail to hatch and embryos die during early development. RSF females are normally fertile. Interestingly, the intensity of SF sterility, i.e., the proportion of eggs that do not hatch, appears correlated to some extent with the frequency of I factor retrotransposition, although the relationship between transposition and sterility is unclear (![]()
I factors clearly self-regulate their activity since retrotransposition rarely occurs in inducer strains. When a single I factor is introduced into the genome of a reactive line, it transposes during a few generations until the number of copies reaches a certain point, estimated to be
1015, above which the strain becomes inducer and transposition stops (![]()
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Recent results have shed some light on the question of how I factors self-regulate. ![]()
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In this article we report independent results that confirm the results of ![]()
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| MATERIALS AND METHODS |
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Fly stocks:
All strains used in the experiments are M in the PM system of hybrid dysgenesis (![]()
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Plasmid constructions and transgenic lines:
Basic molecular biology techniques were adapted from ![]()
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- pI: the 5' UTR of the I factor was extracted from pI186 (
MCLEAN et al. 1993 ) as a HindIII-BamHI fragment and ligated to the same sites in the polylinker of pBluescript-KS-, producing the pBT186 plasmid; then the 5' UTR was extracted from pBTI186 as a KpnI-SpeI fragment that was ligated to the KpnI and SpeI sites of pCaSpeR-4 vector.

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Figure 1. Constructs and transgenic lines. Drawings represent the I factor (top) and the different transgenes used in this study. ORF1 and ORF2 are indicated as open boxes while untranslated regions from the I factor (5'I and 3'I, 5' and 3' untranslated regions, respectively) are indicated as solid boxes. Light strippled boxes indicate the promoter (phs) and the terminator region (ths) of the hsp70 gene, while heavy strippled boxes indicate the 3' end of the P element (3'P). Arrows indicate the position of transcription initiation from the I factor or the hsp70 promoter. Parts of the transgenes that are irrelevant to the study (white sequences and the 5' end of the P element) are omitted. On the left of the drawings are the names of the different transgenes. On the right of the drawings are the names of the transgenic lines derived from the wK and JA strains, and the last column summarizes the repressor effects of the transgenes on I factor activity. - ORF1: the I factor ORF1 sequences were extracted from pI407 as a MspI-EcoRV fragment and ligated to the same sites in the polylinker of pBluescript-KS-, producing the pBTORF1 plasmid; then the ORF1 sequences were extracted from pBTORF1 as an EcoRI-HpaI fragment that was ligated to the EcoRI and StuI sites of the pCaSpeR-4 vector (
THUMMEL and PIRROTTA 1991 ).
- pIORF1: the 5' UTR + ORF1 sequences of I were extracted from pI407 as a ClaI-HindIII fragment and ligated into the same sites in the polylinker of pBluescript-KS-, producing the pBTIORF1 plasmid; then the 5' UTR + ORF1 sequences were extracted from pBTIORF1 as an EcoRI-HpaI fragment that was ligated to the EcoRI and StuI sites of the pCaSpeR-4 vector.
P-element-based transformations were essentially as described by ![]()
2-3 (Flybase ID no. FBmc0002087) was coinjected as the source of transposase. The recipient strains were wK or JA. Several independent homozygous transgenic lines were established for each construct by selecting dark orange-eyed flies, chromosome localizations of the transgenes were determined using balancer stocks, and integrity of the transgenes was checked by Southern blot analyses.
Crosses and measurements of female fertility:
All crosses were performed on standard fly medium (![]()
| RESULTS |
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The repressor effect of ORF1 sequences is independent from the amount of ORF1 transcript:
Constructs in which ORF1 and ORF2 are controlled by the D. melanogaster hsp70 heat-inducible promoter (Fig 1) were introduced into the genome of the reactive strain wK. Homozygous transgenic lines HH and HN, containing the transgenes hsORF1 and hsORF2, respectively, (Fig 1) were established and maintained over 2 years (
35 generations) at 20° before experiments. Each transgenic line contains one homozygous copy of the transgene, except HH9, which contains two. Each transgenic line was then divided into two sublines (including the recipient strain wK), and one of the sublines was submitted every day to a heat treatment of 1 hr at 37°. We verified that the heat treatment had no effect per se on the fertility of females from the wK strain (data not shown). We also checked by Northern blot analyses that they resulted in a large amount of ORF1 or ORF2 transcripts among the RNAs extracted from whole flies, whereas these transcripts are not detectable in the absence of heat treatments (Fig 2). In addition it has to be noted that HN transgenic lines were used in another study to show that hsORF2 transgenes can mobilize the defective I element IviP2 (![]()
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After two generations, the fertility of SF females issued from crosses between females from transgenic lines and males from the w1118 inducer stock was measured (Fig 3) by determining the hatching percentage of their eggs. SF females issued from the strongly reactive wK control were, as expected, strongly sterile, with a percentage of hatching eggs close to 0% when they were <3 days old (Fig 3A) and increasing as they got older (6 and 12 days old, Fig 3B). This hatching percentage was not affected when the wK strain was submitted to a daily heat treatment for two generations before the dysgenic cross (Fig 3, a and b). This indicates that a daily heat shock at 37° for 1 hr in our experimental conditions has no observable effects on reactivity levels, contrary to long thermal treatments at 29° (![]()
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100 (HN9 and HN27) and 140 (HN27) generations after transgenesis and still produced highly sterile SF females, whereas HH lines reproducibly produced SF females that were less sterile than SF females from the control cross (data not shown). All transgenic lines contain one homozygous copy of the transgene, except HH9, which contains two, and they produce the less sterile SF females.
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We tested the repressor effect of hsORF1 transgenes in another genetic background. Transgenic lines HOU, containing the same hsORF1 transgene as HH lines, and transgenic lines HOUf, containing the hsORF1fs transgene in which a frameshift just after the first ATG prevents expression of the ORF1 protein (Fig 1), were established by P-mediated transformation of the reactive strain JA. The establishment of each transgenic line was accompanied by the parallel establishment of a sibling nontransgenic line as a control. The transgenic and nontransgenic lines were derived, respectively, from orange- and white-eyed individuals issued from the same transformed fly. Dysgenic crosses of females of the lines with males from the w1118 inducer stock were performed and the fertility of the resulting SF females was measured. Data are shown in Fig 4. HOU and HOUf transgenic lines produced SF females that were less sterile than nontransgenic females from the internal control. The fertility improvements appear weak a few generations after transgenesis (HOU at generation 6, HOUf at generation 8) but are more obvious at generations 4042, except for line HOU57a, which shows no effect. It is noticeable that two transgenic lines, HOU33 and HOUf29.3, that produce the less sterile SF females, contain two homozygous copies of the transgenes, whereas other transgenic lines all have only one copy. These data indicate first that the repressor effect of hsORF1 transgenes is also effective in the JA background and second that hsORF1 transgenes can repress I factor activity independently from expression of an ORF1 protein. They also suggest that two copies of a transgene may have a stronger repressor effect than one copy.
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The repressor effects of two hsORF1 transgenes are cumulative:
We tested whether the regulatory effect of hsORF1 is enhanced by increasing the number of copies of the transgene. Using lines HH13 and HH16 (transgenes on chromosomes II and III, respectively), we constructed various sublines as shown in Fig 5A. Reciprocal crosses between flies from lines HH13 and HH16 were made to obtain hybrid females heterozygous for both transgenes. These hybrid females were crossed to males of the wK strain. The progeny of these crosses were scored upon eye color intensity and mated to establish sublines. 1613-1, 1613-2, 1613-3, 1613-4, and 1613-5, containing both transgenes at the homozygous state, 1613-16H and 1613-13H, containing one homozygous transgene on chromosomes III and II, respectively, and 1613-wK, devoid of transgene, were obtained in the progeny of the crosses between HH16 females and HH13 males. 1316-7 and 1316-8, containing both transgenes at the homozygous state, and 1316-13H, containing one homozygous transgene on chromosome II, were obtained in the progeny of the reciprocal cross between HH13 females and HH16 males. The fertility of SF females obtained from crosses between females of these sublines and males of the w1118 inducer stock was measured three generations after establishment of the sublines. As shown in Fig 5B, sublines 1613 and 1316, containing two homozygous transgenes, reproducibly produce less sterile SF females than sublines containing only one homozygous transgene, whereas the 1613-wK subline, devoid of transgene, produces strongly sterile SF females, as does the strongly reactive wK strain. Subsequent tests made 29 generations after establishment produced similar results (not shown). Therefore, the effect of hsORF1 transgenes is cumulative.
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The repressor effect of hsORF1 transgenes requires the association of the hsp70 promoter and ORF1 sequences:
We have tested the ability of the hsp70 promoter and of ORF1 sequences without any promoter to repress I factor activity. For this, transgenic lines H, containing the pCaSpeR-hs vector, and OU, containing the sequences of ORF1 (see Fig 1), were established by P-mediated transformation of the JA strain. They all contain one homozygous copy of the transgene. Nontransgenic sibling lines were also established as controls as described above and the regulatory effects of the transgenes were measured at generations 5, 8, 9, 12, and 13 after transgenesis in the case of OU lines and at generations 4 and 16 in the case of H lines. Typical data are shown in Fig 4: none of the transgenes exhibit a regulatory effect. This indicates that the regulatory effect of the hsORF1 transgenes requires the association of the sequences of the hsp70 promoter and of ORF1.
ORF1 under the control of the I factor promoter has no apparent regulatory effect:
The hsORF1 transgenes containing ORF1 under the control of a heterologous promoter are artificial and the regulatory effects obtained with these transgenes might be irrelevant to actual I factor regulation. We therefore decided to test whether ORF1 under the control of the I factor promoter displays a similar repressor activity. Transgenic lines pIOU (containing the pIORF1 transgene) and pI (containing the pI transgene alone, see Fig 1) were established by P-mediated transformation of the JA strain. They all contain one homozygous copy of the transgene, except pIOU17c and pI8f, which contain two. Nontransgenic sibling lines were also established as controls as described above and the regulatory effects were studied at generations 5, 8, 9, 12, and 13 after transgenesis. Typical data are shown in Fig 4. Females of pIOU and pI transgenic lines produced SF females displaying the same high level of sterility as females of the nontransgenic lines, indicating that ORF1 under the control of the I factor promoter has no repressor effect in these conditions. We verified by Northern blot analyses of total RNAs extracted from ovaries of pIOU transgenic lines that ORF1 transcripts are actually produced in these flies (data not shown).
The repressor effect of hsORF1 transgenes is independent from transcription orientation:
The transgene hsORF1as is similar to hsORF1, except that ORF1 is placed in antisense orientation under the control othe hsp70 promoter and that the hsp70 3' UTR is deleted (see Fig 1). Two lines, named HOUas49 and HOUas51, each containing two homozygous copies of this transgene, were obtained in the JA strain. Females of HOUas lines produced SF females that were more fertile than SF females produced by females of the JA strain. This repressor effect was not affected by heat-shock treatments applied every day during two successive generations according to the protocol described for HH lines (Fig 6). Therefore, transgenes that contain ORF1 under the control of the hsp70 promoter, whatever the orientation of ORF1, display similar regulatory properties on I factor activity.
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Maternal transmission of the repressor effects of the transgenes:
Since I factor autoregulation has a maternal component, evidenced by the fact that I factor activity is lower in the germ line of RSF females (having received I factors from their mother) than in the germ line of SF females (having received I factors from their father), we tested whether the regulatory effects of the transgenes are transmitted maternally. For this, we performed the experiments described in Fig 7 with transgenic lines HOU33, HOUf29.3, and HOUas51r. Heterozygous females were produced by the two reciprocal crosses between flies from transgenic lines and flies from the JA stock (labeled
and
in Fig 7) and were crossed with males from the w1118 inducer stock to produce SF females whose fertility was measured. The fertility of SF females issued from crosses of females from the homozygous transgenic lines (labeled 
in Fig 7) or females from the JA stock (labeled ø in Fig 7) with males from the w1118 inducer stock was determined in parallel. In each case a clear maternal effect was observed: heterozygous females having received the transgene from their mothers produced SF females that were more fertile than heterozygous females having received the transgene from their fathers. A zygotic effect is also observed, since the progeny of heterozygous orange-eyed SF females (that received the transgene) were more fertile than that of white-eyed SF females (that did not receive the transgene).
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| DISCUSSION |
|---|
In this article we test the ability of various transgenes containing ORF1 sequences to reduce I factor activity. Our experimental conditions were designed to detect repressor effects of transgenes on the intensity of the characteristic syndrome of sterility that is associated with high levels of I factor transposition. Not surprisingly, this methodology produces highly variable data. The first reason is inherent to any experiment that is based on transgenesis. The activity of a given transgene will obviously be modulated by surrounding regions, depending on its position in the genome. This is why we have systematically studied several transgenic lines for each construct. The second reason comes from the fact that I factor activity is modulated by the cellular state, called reactivity, that is prevalent in reactive stocks used to produce SF females. Reactivity is subject to variations due to environmental and physiological factors such as temperature and aging, and these changes are partially heritable for a few generations (![]()
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Our data show that various transgenes containing ORF1 sequences under the control of the hsp70 promoter have a repressor effect on I factor activity. This repressor effect is observed with intact ORF1 sequences (transgenes hsORF1 in lines HH and HOU) as well as when a frameshift mutation prevents synthesis of the ORF1 protein (transgene hsORF1fs in lines HOUf) or when ORF1 is in an antisense orientation (transgene hsORF1as in lines HOUas). It is abolished when the hsp70 promoter is removed (transgene ORF1 in lines OU). These features mostly coincide with those reported by ![]()
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However, two of our observations are apparently not in agreement with the hypothesis of RNA mediation. First, transgenes containing ORF1 under the control of the I factor promoter (transgene pIORF1 in lines pIOU) have no regulatory effect, although they are transcribed in the ovaries. Second, while the repressor effect of hsORF1 transgenes is enhanced by an increase of their copy number (sublines HH1316 and HH1613), we find that whatever the orientation of ORF1, it is not enhanced by heat induction of the hsp70 promoter, although this promoter is heat inducible in the female germ line at the time of I transposition (![]()
It is possible that a DNA-based recognition mechanism could also be invoked: indeed, our results show some similarities to cosuppression involving the Adh and white genes in D. melanogaster (![]()
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Some transgenes show no effect on I factor activity in our experimental conditions. However, these conditions would not have allowed us to detect low or slowly accumulating effects. ![]()
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Z, displays a strong repressor effect on I factor activity (![]()
Z contains a hsp70-LacZ reporter gene inserted within ORF2 (![]()
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This raises the question of the relevance of our results on I factor self-regulation: indeed, pIORF1 transgenes are more similar to I elements than hsORF1 transgenes are, since they possess the 5' UTR of the I factor instead of the hsp70 promoter. There is no evidence that one copy of the I factor in the absence of the hsp70 promoter would be sufficient to trigger repression. Maternal transmission is one characteristic of natural repression of I elements occurring in inducer strains. Our study shows that the repressor effect of hsORF1 transgenes on I factor activity is maternally transmitted, suggesting that our observations are relevant to I self-regulation. The regulation of the I factor is complex and still not understood. It might actually involve more than one mechanism. Whatever the case it is a very stimulating question that can be used to study epigenetic inheritance.
| ACKNOWLEDGMENTS |
|---|
We thank Marie Balakireva and Maria del Carmen Seleme for their help in some of the experiments. This work was supported by grants from the Programme Génome of the CNRS and from the Association pour la Recherche sur le Cancer (ARC contract 5234). S.M. was supported by fellowships from the Ministère de la Recherche et de la Technologie and from the Association pour la Recherche contre le Cancer (ARC).
Manuscript received March 13, 2000; Accepted for publication July 10, 2000.
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