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The Drosophila embargoed Gene Is Required for Larval Progression and Encodes the Functional Homolog of Schizosaccharomyces Crm1
Simon Collier1,a,b, H. Y. Edwin Chan2,a, Takashi Todac, Carol McKimmiea, Glynnis Johnsona, Paul N. Adlerb, Cahir O'Kanea, and Michael Ashburneraa Department of Genetics, University of Cambridge, Cambridge CB2 3EJ, United Kingdom,
b Biology Department and Cancer Center, University of Virginia, Charlottesville, Virginia 22903
c Laboratory of Cell Regulation, Imperial Cancer Research Fund, London WC2A SPX, United Kingdom
Corresponding author: Simon Collier, University of Manchester School of Biological Sciences, 2.205 Stopford Bldg., Oxford Rd., Manchester M13 9PT, United Kingdom., simon.collier{at}man.ac.uk (E-mail)
Communicating editor: T. SCHÜPBACH
| ABSTRACT |
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The CRM1 (Exportin 1) protein is a receptor for leucine-rich nuclear export signal sequences. We have molecularly characterized the Drosophila melanogaster embargoed (emb) gene and find that it encodes a product with 49 and 71% sequence identity to the fission yeast Schizosaccharomyces pombe and human CRM1 proteins, respectively. We show that expression of the emb cDNA is sufficient to suppress the growth phenotype of both conditional-lethal and null S. pombe crm1- mutant strains, suggesting that emb encodes the functional homologue of the S. pombe Crm1 protein. Through mutagenesis screens we have recovered a series of recessive lethal emb mutations. There is a substantial maternal contribution of emb mRNA and animals hemizygous for our emb alleles can develop to second instar larvae but persist at this stage and consistently fail to undergo the molt to the third instar stage. We see a nuclear accumulation of endogenous actin in the intestinal epithelial cells of the emb mutant larvae, consistent with a role for the emb gene product in nuclear export of actin protein.
THE division of eukaryotic cells into nuclear and cytoplasmic compartments has required the development of mechanisms that actively and selectively transport macromolecules through pores in the nuclear membrane. The nuclear trafficking of proteins is mediated by a group of related receptors called karyopherins that bind a peptide signal on the protein cargo and carry it through the nuclear pore (![]()
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It was originally believed that one of the primary roles of the CRM1 protein is to maintain chromosome integrity, because the first cold-sensitive fission yeast (Schizosaccharomyces pombe) crm1 mutants showed atypical chromatin structure when cultured at a restrictive temperature (![]()
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A further source of S. pombe crm1 alleles was a screen for mutations that confer resistance to leptomycin B, a Streptomyces-derived antifungal antibiotic (![]()
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Much of our understanding of the mechanisms of nuclear export has come from genetic studies in yeast and from Xenopus oocytes and mammalian cell culture systems (![]()
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| MATERIALS AND METHODS |
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Molecular characterization of the emb gene:
Restriction fragments from the genomic phage clone W5-p9 (![]()
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Whole mount in situ hybridization:
Digoxigenin-labeled riboprobes corresponding to the sense and antisense strands of the 3' untranslated region of our full-length emb cDNA were synthesized from the T7 and T3 promoters, respectively, of the emb cDNA subclone 2-4XN. The 2-4XN construct consists of a 700-bp fragment of the cDNA clone emb2-4, extending from the XhoI site immediately 3' of the emb coding sequence (see Fig 1B) to the downstream pNB40 vector NotI site, ligated into the XhoI/NotI polylinker sites of the Bluescript plasmid vector. In situ hybridization of the emb riboprobes to 024-hr Oregon-R embryos was undertaken essentially as described by ![]()
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Construction of emb expression constructs:
The pRE PCD1emb and pREPCD41emb constructs were made in two steps. First, a restriction fragment extending from the internal emb2-4 cDNA BamHI site (see Fig 1B) to a downstream pBluescript vector NotI site was ligated within the pREPCD1/41 polylinker to make a primary construct. Second, the product of a PCR amplification of the emb2-4 cDNA, using a primer (GTCA GGATCC ATG GCG ACA ATG TTG ACA TC) that introduces a BamHI restriction site immediately 5' of the putative emb start codon and a primer downstream of the internal emb BamHI site, was BamHI digested and ligated to the primary construct. The correct orientation and sequence of the cloned PCR fragment was confirmed by restriction mapping and DNA sequencing. The pREP42emb construct was also made in two steps. First, a PCR primer (CAAA CAT ATG GCG ACA ATG TTG ACA) was used to introduce a NsiI recognition site overlapping the putative emb start codon in an amplification reaction with a second primer downstream of the internal emb BamHI site. The PCR product was digested with NsiI and BamHI and ligated within the pREP42 polylinker to make a primary construct. The fidelity of the cloned PCR product was checked by DNA sequencing. Second, the remainder of the coding region plus the nmt1 polyadenylation site was added by ligating the BamHI/SstI insert from the pREPCD1emb construct (see above) to the primary construct.
Suppression of fission S. pombe crm1 mutants by emb expression:
Standard procedures for S. pombe genetics were followed (![]()
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Isolation and characterization of embargoed mutants:
Flies were cultured at 25° on yeasted cornmeal agar unless stated otherwise. To screen for mutations lethal with T(Y;2)fy4, X-ray- or EMS-mutagenized b cn males were crossed to SM6a/Gla females. Single b cn/SM6a male progeny were crossed to C(1)M4; T(Y;2)fy4/CyO females and single b cn/SM6a female progeny crossed to T(Y;2)fy4/CyO males. F2 progeny were screened for inviability of the T(Y;2)fy4/b cn class. The lethal phase of hemizygous emb mutants was determined by collecting larval progeny of Df(2L)N22-14/Gla Bc males and emb/Gla Bc females and identifying the furthest developed Bc+ animals. To identify the emb1 lesion, homozygous emb1 second instar larvae were selected from the progeny of emb1/Gla Bc parents on the basis of a Bc+ phenotype. Genomic DNA was prepared from the homozygous larvae and the emb locus PCR amplified using gene-specific oligonucleotide primers. PCR products were directly sequenced from emb antisense primers (see above). The P-element insertion sites of l(2)k16715 and l(2)k06303 were identified by plasmid rescue of the P{lacW} element and flanking sequences using standard procedures (![]()
Nuclear and actin staining of Drosophila gut epithelia:
Homozygous y w; emb second instar larvae were selected from the progeny of y w; emb/CyO [y+] parents on the basis of mouth hook pigmentation. The emb mutant larvae and control homozygous y w second instar larvae were dissected and fixed in PBS with 4% paraformaldehyde. Fixed larvae were incubated with an actin antibody (Sigma A2066, raised in rabbit) at 1:200 dilution and secondary goat anti-rabbit (FITC, Jackson Immunoresearch, West Grove, PA) at 1:200 dilution following standard methods for imaginal disc staining (![]()
| RESULTS AND DISCUSSION |
|---|
Molecular characterization of the emb gene:
In the course of screens for expressed sequences in the Drosophila chromosomal region 29C we isolated a class of cDNAs encoding a polypeptide with strong homology to the S. pombe Crm1 protein (![]()
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cDNA library. The longest of the emb cDNA clones is 4.2 kb and contains an open reading frame of 1063 amino acids that is 49 and 71% identical to the S. pombe (![]()
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emb gene expression:
Our longest emb cDNA hybridizes to two bands of ~4.2 and 3.5 kb on a Northern blot of Drosophila mRNA, the larger band having a severalfold higher intensity in all developmental stages tested (data not shown). Our emb cDNAs fall into two classes: a single pupal cDNA is polyadenylated just over 100 nucleotides 3' of the termination codon and the other four cDNA clones, from embryonic and pupal libraries, are polyadenylated 660 nucleotides further downstream (Fig 1B). We conclude that the two size classes of emb mRNA result from differential polyadenylation and that both transcripts encode the same peptide sequence.
We have hybridized a riboprobe corresponding to an antisense strand of the 3' untranslated region of our full-length emb cDNA to mixed-stage wild-type (Oregon-R) Drosophila embryos (Fig 2). We find ubiquitous expression of the emb transcript at all stages of embryonic development (Fig 2, AD), as befits a gene that encodes a central component of the nuclear trafficking system. This includes a substantial maternal contribution of emb mRNA that is evident in very early embryos (Fig 2A). However, from the cellular blastoderm stage (Fig 2B) onward the levels of emb expression vary across the developing embryo. Specific tissues in which emb expression is relatively high are the brain, hind gut, and posterior spiracles shortly before dorsal closure (Fig 2C) and the ventral nerve cord, midgut, and somatic musculature shortly after dorsal closure (Fig 2D). In each case emb expression seems to increase when the tissue is well developed, suggesting that emb is required for the function or maintenance of these tissues rather than for their formation.
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Suppression of S. pombe conditional-lethal crm1 mutations by emb expression:
The high sequence homology between the emb gene product and the S. pombe Crm1 protein prompted us to ask if the function of these proteins has also been conserved. We initially addressed this question by testing if the expression of an emb cDNA in conditional-lethal S. pombe crm1 mutants could suppress the growth phenotype seen at restrictive conditions. The emb coding region was ligated immediately downstream of the thiamine-repressible nmt1 promoter of the pREPCD1 expression vector and the attenuated nmt1 promoter of pREPCD41 (![]()
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Suppression of an S. pombe crm1 null mutation by emb expression:
The suppression of conditional-lethal S. pombe crm1 mutant growth phenotypes by the expression of the emb cDNA suggests that the emb gene encodes the functional homologue of S. pombe Crm1. However, it remained possible that the Drosophila protein can only substitute for one activity of the yeast protein that is sensitive to the introduction of conditional-lethal mutations. We therefore attempted to suppress a null crm1 mutant that had been made by inserting the S. cereviseae LEU2 gene at the crm1 locus (![]()
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Identification of emb mutants:
The chromosome translocation T(Y;2)fy4 breaks in the cytological region 29B4-C2 and was recovered from an X-ray screen for new fy alleles (![]()
/ hemizygotes is indistinguishable from that of a putative emb null [l(2)k06303, see Table 2 and below].
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Our emb alleles fail to complement the Berkeley Drosophila Genome Project P-element insertion lines l(2)k06303 and l(2)k16715, which had both been mapped to 29C3-C4 (![]()
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The similar lethal phase of the emb alleles suggests either that they are all genuine amorphs, perhaps reflecting the vulnerability of the highly conserved CRM1 protein to introduction of null mutations. Alternatively, the emb alleles are of differing strengths, but a high demand for the emb gene function prior to the second larval molt means that even hypomorphic emb alleles fail to support ecdysis (see below).
The lethal stage of emb mutants:
We identified the lethal stage of hemizygous emb flies by collecting larval progeny from emb/Gla Bc females crossed to Df(2L)N22-14/Gla Bc males (see Table 2). For all emb alleles, emb hemizygous Bc+ second instar larvae were abundant, but no hemizygous third instar larvae were seen. This was not due simply to developmental delay, as isolated second instar emb hemizygotes can survive for up to 7 days at 25° and still do not undergo the L2/L3 molt. This absolute block of ecdysis might mean that some component of the ecdysone signaling pathway is dependent upon emb-mediated nuclear export. Such consistent arrest in larval development is reminiscent of hypomorphic mutations of the stranded at second (sas) gene that encodes a cell surface receptor protein containing fibronectin type III class repeats (![]()
The CRM1 protein is a fundamental component of the nuclear export machinery that we would expect to play a vital role in the development of the embryo to larval stages. Therefore, the survival of animals carrying emb null alleles to second instar larvae is probably dependent upon the maternally contributed emb mRNA present in early embryogenesis (Fig 2A), particularly as there is no closely related protein encoded by the Drosophila genome that might readily substitute for emb function.
Nuclear accumulation of actin in gut cells of emb mutant larvae:
To confirm the role of the emb gene product in nuclear export we looked for an abnormal subcellular distribution of actin in our emb mutants. Due to its low molecular weight (~42 kD), actin is believed to migrate freely through nuclear pores, but becomes localized exclusively in the cytoplasm due to CRM1-dependent nuclear export (![]()
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-actin at the sites of the two internal NES sequences, suggesting that they are also substrates for Crm1-mediated nuclear export. We stained intestinal epithelia of emb and y w mutant second instar larvae with an actin antibody and with propidium iodide to highlight nuclei (Fig 5). In wild-type epithelial cells actin is exclusively cytoplasmic (Fig 5A), but in ~50% of cells from emb1/emb2 mutant larvae actin staining is both nuclear and cytoplasmic (Fig 5C). Similar nuclear accumulation of actin occurs when rat tissue culture cells are incubated with the CRM1 inhibitor Leptomycin B (![]()
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| FOOTNOTES |
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1 Present address: School of Biological Sciences, University of Manchester, Manchester M13 9PT, United Kingdom. ![]()
2 Present address: Department of Biology, University of Pennsylvania, Philadelphia, PA 191046018. ![]()
| ACKNOWLEDGMENTS |
|---|
Many thanks to David Hughes for supplying the pREP vectors and to Martin Baron and Marian Wilkin for helping S.C. to complete this work in Manchester. Thanks also to John Roote, David Gubb, Rachel Drysdale, Anne Beyer, and Haeryun Lee for useful discussion. This work was funded by a Medical Research Council program grant to Michael Ashburner and David Gubb, a National Institutes of Health grant to Paul Adler, a Hong Kong Croucher Foundation Scholarship to Edwin Chan, and an Imperial Council Research Fund grant to Takashi Toda. Confocal microscopy was carried out at the Cambridge University Multi-imaging Centre and was supported by a Wellcome Trust grant.
Manuscript received October 18, 1999; Accepted for publication April 21, 2000.
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