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Genetic Modifiers of the Drosophila NSF Mutant, comatose, Include a Temperature-Sensitive Paralytic Allele of the Calcium Channel
1-Subunit Gene, cacophony
Bonnie Dellingera,
Ryan Fellinga, and
Richard W. Ordwaya
a Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802
Corresponding author: Richard W. Ordway, Department of Biology, 208 Mueller Laboratory, Pennsylvania State University, University Park, PA 16802., rwo4{at}psu.edu (E-mail)
Communicating editor: T. C. KAUFMAN
| ABSTRACT |
|---|
The N-ethylmaleimide-sensitive fusion protein (NSF) has been implicated in vesicle trafficking in perhaps all eukaryotic cells. The Drosophila comatose (comt) gene encodes an NSF homolog, dNSF1. Our previous work with temperature-sensitive (TS) paralytic alleles of comt has revealed a function for dNSF1 at synapses, where it appears to prime synaptic vesicles for neurotransmitter release. To further examine the molecular basis of dNSF1 function and to broaden our analysis of synaptic transmission to other gene products, we have performed a genetic screen for mutations that interact with comt. Here we report the isolation and analysis of four mutations that modify TS paralysis in comt, including two intragenic modifiers (one enhancer and one suppressor) and two extragenic modifiers (both enhancers). The intragenic mutations will contribute to structure-function analysis of dNSF1 and the extragenic mutations identify gene products with related functions in synaptic transmission. Both extragenic enhancers result in TS behavioral phenotypes when separated from comt, and both map to loci not previously identified in screens for TS mutants. One of these mutations is a TS paralytic allele of the calcium channel
1-subunit gene, cacophony (cac). Analysis of synaptic function in these mutants alone and in combination will further define the in vivo functions and interactions of specific gene products in synaptic transmission.
UNDERSTANDING electrical signaling in neurons requires in vivo analysis of the underlying molecular mechanisms. A classical approach to this problem has been the use of temperature-sensitive (TS) paralytic mutants of Drosophila (![]()
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Our recent work has extended some early studies on TS paralytic mutants (![]()
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This recent progress in analyzing the function of NSF at synapses adds to a substantial body of work on the biochemical interactions between NSF and other synaptic proteins. NSF is a cytosolic ATPase thought to regulate the interactions of several proteins required in neurotransmitter release. These include a class of membrane proteins called soluble NSF attachment protein receptors (SNAREs). The characteristics and proposed interactions of these proteins are reviewed elsewhere (![]()
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SNARE proteins are present on the synaptic vesicle membrane as well as the presynaptic plasma membrane to which these vesicles are targeted. After a vesicle docks at the target membrane, a 7S SNARE protein complex is thought to form by assembly of vesicle SNAREs (v-SNAREs, e.g., synaptobrevin) and target SNAREs (t-SNAREs, e.g., syntaxin and SNAP-25). This complex may function directly in membrane fusion (![]()
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Some progress has been made in determining the structural basis of NSF function. NSF is a homomultimer composed of six subunits arranged in a barrel structure (![]()
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Because NSF can disassemble SNARE complexes, it may influence the biochemical interactions of SNAREs with other proteins. For example, SNAREs interact directly with the voltage-gated calcium channels that provide the calcium trigger for neurotransmitter release. These are typically non-L type, high voltage-activated calcium channels (![]()
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1, as well as
2
-, ß-, and
-subunits.
1-Subunits implicated in neurotransmitter release contain a synaptic protein interaction (SYNPRINT) domain that binds several synaptic proteins, including both v- and t-SNAREs (reviewed in ![]()
1-subunit as well (![]()
1-subunits and synaptic proteins are proposed to link the neurotransmitter release apparatus to the calcium channel and thus couple calcium influx to fast synaptic vesicle fusion (![]()
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1-subunit interactions with the t-SNARE, syntaxin, may regulate the availability of calcium channels for voltage activation (![]()
The biochemical interactions of NSF, SNAPs, SNAREs, and calcium channels imply close functional relationships among these components of the neurotransmitter release apparatus. To further investigate the molecular basis of dNSF1 function in neurotransmitter release and to broaden our analysis of synaptic mechanisms to other proteins, we have performed a genetic screen to identify mutations that interact with comt. Here we report identification, genetic characterization, and behavioral analysis of four genetic modifiers of comt. These include intragenic mutations that will contribute to structure-function analysis of dNSF1, as well as extragenic mutations that identify other gene products with related functions in synaptic transmission. Some of this work has been reported in preliminary form (![]()
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| MATERIALS AND METHODS |
|---|
Drosophila stocks:
All stocks were maintained at a room temperature of 23°25°. The previously isolated cacophony (cac) alleles, l(1) L13 and cacS, were generously provided by Jeffrey C. Hall (Brandeis University). comtST53 and comtST17 were from our laboratory stock collection. X chromosome meiotic mapping was carried out by conventional methods using a y m wy g f chromosome. Deficiency lines were obtained from the Bloomington and Umeå stock centers.
Mutagenesis and screening:
Male flies were isolated from females for 24 hr and then starved for a period of 35 hr preceding the mutagenesis. These males were exposed to a solution of 25 mM ethyl methanesulfonate (EMS) in 1% sucrose for 24 hr and then mated in groups of 30 to a similar number of virgin females. Five days after mating, the EMS-treated males were discarded. F2 progeny were tested for temperature-sensitive paralysis by placing flies in a vial maintained at 36° by immersion in a water bath. Tests were typically 3 min in duration. F2 progeny were collected twice from each cross, approximately 14 and 21 days after mating. A total of 3050 progeny were tested from a typical cross.
Behavioral analysis:
Behavioral testing was carried out in vials using the same apparatus described for screening. Two-day-old flies were tested in groups of six, and five groups of flies were tested for each genotype (n = 5). Time for 50% paralysis represents the time at which three flies were no longer able to stand. The test vials were plugged with cotton. In all tests exceeding 5 min in duration, the cotton plug was wet with water after 5 min to prevent dehydration.
Sequencing intragenic modifiers:
Genomic DNA was prepared from males carrying the modifier mutation. This was used as template in PCR reactions amplifying a 3-kb region containing the entire coding sequence of dNSF1. Direct sequencing of gel-purified PCR products was carried out by automated sequencing at the Penn State University nucleic acids facility. Sequences from the mutants were compared directly to the comtST53 parent chromosome used in the mutagenesis.
Data analysis:
Graphing and analysis of data were carried out using Microsoft Excel. All data are presented as the mean ± SEM. Using an unpaired Student's t-test, statistical significance was assigned to comparisons with P values
0.05. In the figures, values significantly different from control values are marked with an asterisk.
| RESULTS |
|---|
As originally reported by SIDDIQUI and BENZER (1976), comt is located on the X chromosome at an approximate meiotic map position of 1-40. The first comt mutation to be identified, a TS paralytic allele referred to as com (![]()
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To test for deviations from the comt phenotype, flies were examined for TS paralysis at 36°. At this temperature, comtST53 is paralyzed in ~1.5 min, allowing either acceleration or slowing of paralysis to be observed. The progeny of 3196 individual F1 males were tested, and a total of six candidate modifier mutations were subjected to genetic characterization. Two were found to be TS paralytic mutations exhibiting no apparent interaction with comt [these include one paralyzed (para) allele and one TS allele of Shaker] and are not described further. The genetic and behavioral analysis of the remaining four mutations is described below.
Intragenic modifiers of comt:
comtSu1 is a dominant, X-linked suppressor of comt. Thus flies homozygous for comtST53 and heterozygous for comtSu1 exhibit the suppressed phenotype (Table 1). This mutation could not be separated from comtST53 by recombination, suggesting that it may be an intragenic modifier. A second mutation, comte1, is a recessive, X-linked enhancer (Table 1). comte1 appeared to be an intragenic modifier on the basis that its recessive phenotype was not complemented by a comt- deficiency, Df(1)wy26.
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To further characterize these putative intragenic modifiers, the dNSF1 open reading frame was sequenced in each mutant. The coding sequence of dNSF1 is interrupted by only a few small introns and thus direct sequencing of PCR products was performed using genomic DNA as template. Sequence from each of the mutants was compared directly to the comtST53 parent chromosome used in the mutagenesis. Consistent with the use of EMS as a mutagen (![]()
A transition. This mutation occurred at position 1114 in the dNSF1 cDNA sequence, converting an invariant alanine to threonine at position 279 in the D1 domain (Fig 2A). comte1 contained a single G
A transition at position 1930 of the dNSF1 cDNA sequence. This mutation changes an invariant alanine to threonine at position 551 within the D2 domain (Fig 2B). The presence of the comtST53 mutation was confirmed in each case. As reported earlier (![]()
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Both intragenic modifiers change amino acids close to or within an ATP-binding site. In the case of comtSu1, the mutation is located near the ATP-binding region of the D1 domain (Fig 2A). The second intragenic modifier mutation, comte1, occurs within the D2 ATP-binding site. The latter mutation is of particular interest to structure-function analysis because alanine 551 (Fig 2B) plays a key role in ATP binding by the D2 domain. In the crystal structure of the D2 domain of Chinese hamster ovary (CHO) cell NSF (![]()
-phosphate (Fig 2C). Thus comte1 is likely to be defective in ATP binding by the second repeat.
To further characterize the comtSu1 and comte1 phenotypes, behavioral analysis was performed for each of these mutations in a comtST53 genetic background. comtSu1 comtST53 double mutants exhibited slower paralysis than did comtST53 alone (Fig 3). At 36°, time for 50% paralysis was increased from 1.53 ± 0.05 min (n = 5) in comtST53 to 3.01 ± 0.13 min (n = 5) in the double mutant. The other intragenic modifier, comte1, accelerated comtST53 paralysis (Fig 3). In comtST53 comte1 double mutants, the time for 50% paralysis at 36° was reduced to 0.81 ± 0.05 min (n = 5).
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Extragenic modifiers of comt:
A third mutation was also X linked, but could be separated from comt by recombination and exhibited a TS behavioral phenotype by itself. At 36° or 38°, this mutant typically stands motionless and only infrequently walks a short distance (typically 23 body lengths). In contrast, wild-type flies typically exhibit fast, uninterrupted walking and a generally high level of activity under these conditions. Because this mutant appears to stall at high temperature, we have named it overheated (ovr). As shown in Table 2, ovr is recessive. Recombinational mapping indicated that ovr lies ~7 map units to the right of forked. Deficiency mapping showed that it is included within Df(1) HF396, but not within Df(1)mal3, thus localizing the mutation to cytological region 18E1-19A2.
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Although ovr by itself does not exhibit paralysis at 36°, it accelerates the paralysis observed in comtST53 (Fig 4A). ovr alone is paralyzed after a long exposure to 38°, exhibiting 50% paralysis at 22.04 ± 0.85 min (n = 5). To examine whether the genetic interaction between comt and ovr is specific to the comtST53 allele, comtST17 ovr double mutants were generated and subjected to behavioral analysis. The ovr mutation enhanced the TS paralytic phenotype of comtST17 as well (Fig 4B), indicating a general interaction between the ovr and dNSF1 gene products.
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The final mutation is also an X-linked recessive enhancer. This mutation could be separated from comt and by itself exhibited rapid TS paralysis at 38° (Table 2). Meiotic mapping placed this mutation ~2 map units to the left of comt. Deficiency mapping refined this position to the cytological interval 11A1-2, as defined by the left limit of Df(1) KA10 and the right limit of Df (1) HA85. This region includes the cac gene, which encodes a homolog of voltage-gated calcium channel
1-subunits (![]()
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The cac locus was originally identified in a screen for mutations altering courtship song (![]()
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1-subunits implicated in neurotransmitter release (![]()
1-subunit responsible for neurotransmitter release at neuromuscular synapses (![]()
Analysis of TS paralysis in cacTS2 comtST53 double mutants confirmed the interaction between these mutations (Fig 5). Although cacTS2 alone is not paralyzed at 36°, cacTS2 comtST53 double mutants exhibited faster paralysis at this temperature than did comtST53 alone. At 38°, rapid paralysis in the double mutant was also faster than in cacTS2 alone, indicating that comtST53 is an enhancer of cacTS2.
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To examine whether the interaction between cacTS2 and comt was specific to the comtST53 allele, cacTS2 comtST17 double mutants were generated and subjected to similar behavioral tests. As was the case with comtST53, cacTS2 enhanced paralysis of comtST17 (Fig 6A), indicating a general interaction between cacTS2 and dNSF1 loss-of-function mutations. The allele specificity of this interaction was further explored by generating cacS comtST17 double mutants. These double mutants exhibited faster TS paralysis than did comtST17 alone at both 36° and 38° (Fig 6B). As described previously (![]()
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| DISCUSSION |
|---|
Here we report the isolation and characterization of four genetic modifiers of comt, including an intragenic suppressor, an intragenic enhancer, and two extragenic enhancers. Molecular analysis of the intragenic modifiers, characterization of the interacting extragenic loci, and analysis of the allele specificity of these interactions is described. The results reported here may further define the structure-function relationship of dNSF1, as well as the interactions of dNSF1 with other gene products in the neurotransmitter release process.
A landmark screen carried out by the Suzuki laboratory (![]()
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Intragenic modifiers:
comtSu1 is an alanine to threonine missense mutation near the ATP-binding site of D1 (Ala 279). This mutation is a dominant suppressor of TS paralysis in comtST53, which is a serine to leucine missense mutation near the C-terminal end of D1 (Ser 483; ![]()
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Given the proximity of comtSu1 to the D1 ATP-binding site, another possibility is that suppression results from an alteration in ATP binding. In vitro structure-function analysis indicates that ATP binding and hydrolysis by D1 are essential for NSF activity (![]()
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An important step in addressing these mechanisms will be analysis of comtSu1 alone, as well as its interactions with other comt alleles. Although it may be difficult to separate the comtST53 and comtSu1 mutations by recombination (they are separated by 613 nucleotides), these interactions may be investigated by transgenic rescue of comt (![]()
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The comte1 mutation, Ala551Thr, is a recessive, intragenic enhancer of comt. Ala 551 is an invariant residue within the ATP-binding site of the D2 domain and contacts both the ribose ring and the
-phosphate of bound ATP (Fig 2). In vitro structure-function analysis of NSF suggests that the D2 domain plays an important role in oligomerization of NSF, and that ATP binding (but not hydrolysis) by D2 is critical for NSF activity (![]()
Extragenic modifiers:
The genetic interaction between ovr and comtST53 suggests that the ovr gene product may function at synapses, and thus further characterization of ovr may provide new information about the molecular mechanisms of synaptic transmission. The ability of ovr flies to stand at restrictive temperatures suggests a more subtle neuromuscular synaptic phenotype than has been observed in comt (![]()
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Identification of cacTS2 as a modifier of comt raises a number of interesting issues. The original cacophony mutant (now known as cacS) was named on the basis of an aberrant male courtship song (![]()
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1-subunits function at flight muscle neuromuscular synapses (![]()
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A second issue is whether the genetic interaction of cacTS2 and comt reflects direct or indirect interactions of the encoded gene products. Electrophysiological analysis indicates that the cac-encoded
1-subunit mediates fast neurotransmitter release (![]()
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1-subunit and SYNPRINT sequences (![]()
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The results presented here identify four mutations that modify the comt TS paralytic phenotype. Two intragenic modifiers, comtSu1 and comte1, are of interest to those investigating the structural basis of dNSF1 activity in vivo. Two extragenic modifiers include a TS allele of cac and a novel TS behavioral mutation. Analysis of synaptic vesicle trafficking in these mutants alone and in combination is expected to further define the in vivo functions and interactions of specific gene products in synaptic transmission.
| ACKNOWLEDGMENTS |
|---|
We thank several members of the lab, Kamal Tilakaratne, Christian McKinney, Missy Hazen, and Fumiko Kawasaki, who participated in the isolation and/or analysis of the mutants described here. We thank Jeffrey C. Hall (Brandeis University) for generously providing several cac stocks. Deficiency stocks were provided by the Bloomington and Umeå stock centers. This work was supported by National Science Foundation grant IBN-9514485.
Manuscript received September 7, 1999; Accepted for publication February 2, 2000.
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F. Kawasaki, S. C. Collins, and R. W. Ordway Synaptic Calcium-Channel Function in Drosophila: Analysis and Transformation Rescue of Temperature-Sensitive Paralytic and Lethal Mutations of Cacophony J. Neurosci., July 15, 2002; 22(14): 5856 - 5864. [Abstract] [Full Text] [PDF] |
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F. Kawasaki, R. Felling, and R. W. Ordway A Temperature-Sensitive Paralytic Mutant Defines a Primary Synaptic Calcium Channel in Drosophila J. Neurosci., July 1, 2000; 20(13): 4885 - 4889. [Abstract] [Full Text] [PDF] |
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