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The Genetic Structure of the Raleigh Natural Population of Drosophila melanogaster Revisited
Shinichi Kusakabe1,a, Yumi Yamaguchi2,a, Hiroshi Baba3,a, and Terumi Mukaiaa Department of Biology, Kyushu University, Fukuoka 812-0053, Japan
Corresponding author: Shinichi Kusakabe, Department of Biology, Faculty of Integrated Arts and Sciences, Hiroshima University, Higashi-Hiroshima 739-8521, Japan., sakusa{at}ipc.hiroshima-u.ac.jp (E-mail)
Communicating editor: M. J. SIMMONS
| ABSTRACT |
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The Raleigh natural population of Drosophila melanogaster was reanalyzed with special attention to possible dysgenic effects during the extraction of chromosomes. About 600 second chromosomes were extracted from the Raleigh natural population, half in the cytoplasm of wild-caught females (native genetic background) and half in the cytoplasm of the laboratory line, C160(In(2LR)SM1, Cy/In(2LR)bwV1) (foreign genetic background). We could not find significant differences between the two extraction schemes in the frequency of lethal second chromosomes (Q = 0.252 for the lines with the negative genetic background vs. 0.231 for the lines with the foreign genetic background) or in the homozygous detrimental (D) and lethal (L) loads (D = 0.210 vs. 0.251; L = 0.287 vs. 0.264). The effective size of the population was estimated to be ~19,000, based on the allelism rate of lethal-bearing chromosomes. The homozygous load markedly decreased in the 15 years since a previous study of the same population.
GENETIC variation in viability in the Raleigh natural population of Drosophila melanogaster was intensively studied in the early 1970s by Mukai and his colleagues (![]()
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In the course of these studies, phenomena such as appreciable frequencies of unique inversions (![]()
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The studies on the genetic structure of the Raleigh natural population (![]()
| MATERIALS AND METHODS |
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Extraction of second chromosomes:
About 400 female flies were collected in the fall of 1984 in Raleigh, North Carolina by Cathy C. Laurie to establish a series of isofemale stocks, each cultured in a vial, maintained in a room at 18°. Within five generations, ~300 second chromosomes were independently extracted both in the wild cytoplasm and in the laboratory (M cytotype) cytoplasm of the Cy/Pm (C160; In(2LR)SM1, Cy/In(2LR)bwV1) stock from each isofemale stock, using the marked inversion method (Figure 1). Thus, ~600 second chromosomes in total were established as isogenic lines with respect to the second chromosomes; half of them had the wild cytoplasm and half had the Cy/Pm cytoplasm. These two types of lines are hereafter called the native and foreign strains, respectively. These isogenic lines were maintained at 18° and served in the following experiments carried out in 19851986. Some of the results were presented at the 58th Annual Meeting of the Genetic Society of Japan (1986).
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Cytological examination and enzyme assay:
All of the salivary gland chromosomes of the established lines were examined for chromosomal aberrations after crossing with a cn bw stock, which has the standard arrangement of bands on the second chromosome. For the electrophoretic survey, the following five enzyme loci located on the second chromosome were examined:
-glycerol-3-phosphate dehydrogenase (
GPDH, map position 2-17.8), malate dehydrogenase (MDH, 2-35.3), alcohol dehydrogenase (ADH, 2-50.1), hexokinase-C (HEX-C, 2-74.5), and
-amylase (AMY, 2-77.3). The four dehydrogenases were assayed by starch gel electrophoresis (![]()
-amylase was assayed by acrylamide gel electrophoresis (![]()
Estimation of the rate of allelism among lethal chromosomes:
For estimating the effective size of the population, allelism tests among lethal chromosome lines were carried out using 74 complete lethal chromosomes from the native strains. Crosses were made between Cy/li and Cy/lj, where l indicates a lethal-bearing chromosome, and subscripts i and j are the line numbers.
Estimation of relative viabilities and homozygous viability load:
Homozygous and heterozygous viabilities were estimated with the Cy method as in ![]()
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Reanalyses of the viability data from the 1970s sample of flies:
The late Professor Terumi Mukai left the original data of viability studied by ![]()
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| RESULTS AND ANALYSES |
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Genetic variation in the 1984 Raleigh population:
The frequencies of fast (F) electrophoretic alleles and inversions are shown in Table 1 in comparison with those observed between 1968 and 1974 in the same population (![]()
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Effective size of the 1984 Raleigh population:
The allelism rate of lethals is estimated to be 0.0061 (16/2638) using 74 lethal chromosomes derived only from the native strains. The effective size of the population (Ne) can be estimated by NEI's formula (![]()

where lg stands for the allelism rate of lethal genes and is estimated by

where lc stands for the allelism rate of lethal chromosomes, U is the total lethal mutation rate, and Q is the frequency of the lethal chromosomes.
With these formulas, the effective size of the population (Ne) was estimated to be ~19,000, assuming the lethal mutation rate (U) per second chromosome per generation to be 0.005 and the rate per locus (µ) per generation to be 10-5 (![]()
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Distribution of viabilities and estimation of homozygous viability load:
About 300 lines from both the native (329 lines) and foreign (281 lines) strains were examined for their homozygous and heterozygous viabilities. The average of the unstandardized heterozygous viabilities was 1.072 ± 0.082 for the foreign strains and 1.059 ± 0.078 for the native strains. The average of the unstandardized homozygous viabilities was 0.640 ± 0.070 for the foreign strains and 0.645 ± 0.069 for the native strains. These are not significantly different. The frequency distributions of the standardized viabilities are shown in Figure 3. By the Kolmogorov-Smirnov nonparametric test, there is no significant difference in the distribution patterns between the native and foreign strains (P > 0.20).
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The frequencies of lethal-carrying second chromosomes with viability <0.05 were 0.237 ± 0.023 (78/329) for the native strains and 0.231 ± 0.025 (62/281) for the foreign strains. These are not significantly different from each other. However, in 1970 (![]()
The averaged standardized viability of all homozygous lines (B), that of the homozygous lines excluding the lethal chromosomes (C), and that of the homozygous lines with viability indices >0.6 are shown in Table 3. There are no significant differences in the average homozygous viabilities from the native and foreign strains. The total homozygous load (T), detrimental load (D), and lethal load (L) were calculated using the formulas given by ![]()

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The estimates are shown in Table 3. We find a marked decrease in the homozygous viability load between 1974 (Table 4) and 1984, reflecting a decrease in both the lethal and detrimental loads. However, the D:L load ratio is not much different between these years.
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Distribution of viabilities in 1970s sample:
In the study of ![]()
2 test. Because the small number of members in the classes inflates the
2 value, we lumped the classes with members
5 with an adjacent class to create classes of adequate size for the test. The number of classes was reduced from 12 to 9. The
2 value was estimated to be 8.19 (d.f. = 8, 0.5 < P < 0.6), which is not significant. The frequencies of lethal-carrying chromosomes were 0.384 ± 0.025 (141/367) for the female-originated lines and 0.364 ± 0.027 (118/324) for the male-originated lines. These two estimates are not significantly different from each other.
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The average relative viability of all homozygous lines (B), that of the homozygous lines excluding those with lethals (C), and that of the homozygous lines with viability indices >0.6 are shown in Table 4. There are no significant differences in the average viabilities of homozygous lines between the female-originated and male-originated lines. The total homozygous load (T), detrimental load (D), and lethal load (L) were calculated based on these estimates and are shown in Table 4. Thus, we could not detect any differences between the two types of chromosomal lines derived by different extraction schemes.
| DISCUSSION |
|---|
The significant findings in this study:
(1) The homozygous load (detrimental and lethal loads) was not different between strains derived by two different extraction schemes (the native lines and the foreign lines) for the second chromosome samples in 1984; (2) the homozygous load of the Raleigh population had greatly decreased during 15 years, although other estimates of the population genetic parameters had not changed.
The dysgenic effect of the cytoplasm-chromosome interaction on homozygous loads in different genetic backgrounds:
We had tested the cytotype of the Cy/Pm (C160) stock used in the present study and found it to be the M type (![]()
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2 strain is 0.067 per second chromosome per generation (![]()
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The change of genetic structure of the Raleigh population during 15 years: allele frequency in isozymes, frequencies of inversions, and effective population size:
The allelism rate of the lethal chromosomes was nearly constant over 15 years and, in addition, the frequencies of alleles at the enzyme loci and of the inversions had not changed. This suggests that the Raleigh natural population is a large panmictic population. The fact that most of these population genetic parameters did not change in 15 years in spite of the large difference in the homozygous load suggests that these enzyme loci and the loci that contribute to the homozygous load seem to segregate independently in the population, indicating that linkage equilibria have been maintained between the loci responsible for these electrophoretic variations and those that contribute to the homozygous load.
The unique inversion observed in this study is superimposed on In(2R)NS (![]()
![]()
25.1 hybridized at the breakpoints of the new rearrangement (![]()
Potential mutator hypothesis and rapid invasion hypothesis:
The homozygous load had decreased in 15 years from 0.834 to 0.497, which is rather close to the value observed in Wisconsin in the early 1960s (0.404 in ![]()
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An increase and then a decrease in lethal frequencies were also observed both in the Katsunuma population in Japan (![]()
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In this context, the potential mutator hypothesis proposed by ![]()
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| FOOTNOTES |
|---|
This article is dedicated to the memory of Dr. Terumi Mukai. ![]()
1 Present address: Department of Biology, Faculty of Arts and Sciences, Hiroshima University, Higashi-Hiroshima 739-8521, Japan. ![]()
2 Present address: Graduate School of Biological Sciences, Kyoto University, Kyoto 606-8224, Japan. ![]()
3 Present address: Toxicology Laboratory, Yokohama Research Ctr., Mitsubishi Chemical Corp., Yokohama, Kanagawa 227-8502, Japan. ![]()
| ACKNOWLEDGMENTS |
|---|
We thank Cathy C. Laurie for sending us the flies used in these studies.
Manuscript received April 9, 1999; Accepted for publication October 7, 1999.
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