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Molecular Evolution of the Escherichia coli Chromosome. V. Recombination Patterns Among Strains of Diverse Origin
Roger Milkmana, Elisabeth A. Raleighb, Melissa McKanea, Diane Crydermanc, Patricia Bilodeaud, and Kerri McWeenyea Department of Biological Sciences, University of Iowa, Iowa City, Iowa 52242-1324,
b New England BioLabs, Beverly, Massachusetts 01915-5591,
c Department of Biochemistry, University of Iowa, Iowa City, Iowa 52242
d Department of Microbiology, University of Iowa, Iowa City, Iowa 52242
e Department L/MD, Abbott Laboratories, Abbott Park, Illinois 60064
Corresponding author: Roger Milkman, Department of Biological Sciences, 138 Biology Bldg., University of Iowa, Iowa City, IA 52242-1324., roger-milkman{at}uiowa.edu (E-mail)
Communicating editor: A. G. CLARK
| ABSTRACT |
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Incorporation patterns of donor DNA into recipient chromosomes following transduction or conjugation have been studied in the progeny of a variety of Escherichia coli crosses in which donor and recipient nucleotide sequences differ by 13%. Series of contiguous or variously spaced PCR fragments have been amplified from each recombinant chromosome and digested with a commercial restriction endonuclease previously shown to distinguish the respective parents in a given fragment. We conclude that entering donor DNA fragments are frequently abridged (cut and shortened) before incorporation, the cutting being due to restriction systems, and the shortening presumably due to exonuclease activity. Analysis of several backcrosses confirms, and extends to conjugation, the importance of restriction in E. coli recombination in nature. The transmission patterns in conjugation are similar to those of transduction, but (as expected) on a much larger scale. Asymmetric results of reciprocal crosses imply that mismatch frequency is not a major factor. Marked differences among the results of simple crosses according to parental strain combinations are consistent with observations that E. coli strains in nature vary dramatically in their restriction-modification systems.
THE present study continues an effort to define the patterns of genetic exchange within the species Escherichia coli in nature, and the forces responsible for these patterns. The species is generally understood to display a largely clonal population structure (![]()
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Of interest in this context, comparative DNA sequencing (![]()
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Given the assumption that these clonal segments arose by recombination, the question remains as to how these patches (on the order of several kilobases) came to be so short (![]()
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This work follows a paradigm (![]()
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This experimental paradigm has been extended to further transduction experiments and to a considerable variety of conjugational crosses. Here we present and compare their results and consider some emerging implications.
| MATERIALS AND METHODS |
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Phage and bacterial strains (detailed in Table 1):
Transduction was mediated by phage P1 strain Cm clr100. The initial transduction donor was ECOR 47 (![]()
+; these markers were presumably introduced along with trpA33 from a Ymel background (C. YANOFSKY, personal communication; ![]()
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Conjugation donors in earlier experiments include BW7623, BW7622, and BW6160; these are Hfr derivatives of K12 carrying Tn10, which confers tetracycline resistance (![]()
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Strain construction:
A major objective was to make Hfr derivatives of the strains that were also to be used as recipients. Each derivative was to acquire an F-prime plasmid that would incorporate, by virtue of homology, into a specific chromosomal position common to all the donor strains to be made. Also a selectable marker, common to all donors, was introduced by transduction. For this purpose, the plasmid would be introduced into a Rec- master donor by conjugation and subsequently retransmitted to the several specific donors-to-be.
First (Fig 1), to produce a master donor, an F-prime plasmid had to be made that could be selected during construction and transmitted only as an F-prime until it had reached its target strain. It would then establish an integration-excision equilibrium sufficient to support a useful level of Hfr activity. Accordingly (Fig 1A), the transposon trg-3120:: Tn10kan (Singer collection) was transduced by phage P1 into F621, an F-prime plasmid in strain PK1206. This transposon will then recombine with the last region to be transmitted by a corresponding Hfr strain. Next (Fig 1B), the transductant strain was mass-mated to strain DH5
, containing the genetic markers gyrA (nalidixic acid resistance) and recA, using a procedure modified to permit expression of kanR. Selection for resistance to both kanamycin and nalidixic acid identified the master donor strain. In DH5
, the genetic marker recA kept the plasmid from integrating, thus permitting only the F-prime plasmid containing the transposon to be transmitted to the (eventual donor) F- strain.
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Next, to produce the individual ECOR donors, zbi-29::Tn10 at 18 min (also from M. Singer) was P1-transduced (Fig 1C) into each desired F- ECOR strain to provide a donor-selectable chromosomal tetR marker for the eventual ECOR donor strain. The master donor was then mated to each modified ECOR strain (Fig 1D), selecting for both tetracycline and kanamycin resistance to produce each specific ECOR donor. The F-prime subsequently integrated reversibly (Fig 1E) in the 28-min/B7/trg region, with a standing frequency sufficient to produce transconjugants in the required numbers. Although the kanR is very rarely transferred directly with the donor chromosomal DNA in an Hfr cross, it may be transmitted on an F-prime plasmid and subsequently integrate into the recipient chromosome (![]()
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Crosses:
Transductants were selected on minimal medium, indicating the replacement of trpA33 by a normal allele. Further details are given in ![]()
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Analysis:
The conjugation experiments required PCR fragments chosen over a broad range. Primers were based on known sequences (K12 with very few exceptions) from genes in desired locations according to Rudd (![]()
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| RESULTS |
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Conjugations:
The results of a typical conjugational cross are illustrated in Table 2. In this and all conjugations described, transfer is counterclockwise: that is, donor DNA enters the recipient cell at a progressively greater counterclockwise distance from the origin of transfer. Here the Hfr donor strain is BW7622 (Table 1), whose origin of transfer is at 47 min; the recipient strain is ECOR 47. The map positions of the 1500-bp PCR fragments are given in minutes. Then below, the positions are given vertically in kilobases, as estimated from the E. coli K12 MG1655 sequence (![]()
To explore strain differences, crosses were first made using the K12-derived donor BW7623 (origin of transfer, 27 min; donor marker, 12 min) and, as recipients, ECOR 47, ECOR 56, and ECOR 72. The resulting transconjugants gave evidence of abridgment similar to that seen in the transductants, but on a larger physical scale, as already illustrated in Table 2. Abridgment was greatest with ECOR 56 as recipient and least with ECOR 72 (detailed data not shown). All the donor fragments were much smaller than the "large chunks" inferred for ~80% of the transconjugants of a large set of K12 x K12 crosses compiled by ![]()
The main experiments to follow fall into three groups: first, conjugations corresponding to the transductions whose results have been published; second, pairs of reciprocal conjugations involving K12, ECOR 47, and ECOR 72; and third, transductional and conjugational crosses and backcrosses involving ECOR 47 and either ER2476 or C1a, both putatively restrictionless K12 derivative strains.
Conjugations corresponding to transductions:
The ECOR 47
K12 W3110 trpA33 transductions (![]()
Reciprocal conjugation crosses among K12, ECOR 47, and ECOR 72:
To reveal possible abridgment in both directions, indicating that each parent contains at least one restriction endonuclease against which the other is not protected, we constructed a set of Hfr donors, and a corresponding set of marked F-minus recipients, derived from strains K12, ECOR 47, and ECOR 72. Results of three reciprocal pairs of crosses are detailed in Table 4 Table 5 Table 6. In these three pairs, the donor marker is situated near minute 18, rather than the previous crosses' minute 28. Three related patterns of variation are evident: first, the results of reciprocal crosses are often strikingly different; second, different recipients vary in their abridgment of a common donor's DNA; and third, DNA from different donors is abridged differently by a common recipient.
Transduction and conjugation with "restriction-" recipients:
The ECOR 47
ER2476 transductants (Table 7A) showed considerably less abridgment than the previously reported transductants of a restriction+ recipient (![]()
In a parallel conjugation experiment (Table 8A), ECOR 47 was then crossed to the "restrictionless" ER2476. There was a sharp reduction in interruptions and an increase in donor segment length relative to ECOR 47
K12 (Table 3A). The corresponding backcross (Table 8B; cf. Table 3B) produced a further decrease in abridgment. In summary, both transduction and conjugation experiments suggest the importance of known R-M systems, as well as possible additional ones that had not been detected by experiments with bacteriophage. A third conjugational cross-and-backcross combination involving the "restrictionless" strain C1a is only summarized in Table 9 (the abridgment of ECOR 47 DNA by the C1a recipients is striking); no transductional counterpart has been made.
Summaries of results (Table 9):
The crosses are now regrouped to address a different perspective. For purposes of comparison, the following parameters are useful, though with the same limitations as any quantification of distances based on linked classical markers. The range over which the donor DNA is seen, whether interrupted or not, is measured in kilobases. The length of a stretch of donor DNA with no evident interruptions is taken as the distance in kilobases between its extremes; this crude estimate assumes that the regions between the PCR fragments analyzed contain no recipient DNA. When interruptions result in the presence of more than one discrete donor fragment, the largest is used in the compilations. The number of progeny displaying interruptions is counted, as well as the total number of interruptions. The collective measurements for the progeny of a cross produce average donor DNA range (R), average maximum donor DNA stretch length (S), number of progeny with interrupted donor DNA (IP), and total number of interruptions (TI). Finally, in backcrosses (included in Groups A and B in Table 9), the extent of mismatched DNA is limited to the extent of the original donor DNA present in the backcross donor, and thus the backcross progeny can contain original donor DNA no more extensive than this limiting length (L).
Dual selection experiment:
One striking aspect of the DNA incorporation patterns in conjugations is the frequent paucity of donor DNA in the direction of the origin of transfer. It is of course easy to understand the decrease in the direction of the recipient marker, but what has become of the proximal donor DNA, which has surely entered the recipient cell? An exploratory experiment employed DCHF1 (Table 1), a modified BW7623 donor now carrying zci-3118::Tn10kan near 28 min in addition to its tetR in purE79::Tn10 (Table 1), which is near 12 min. A cross to ECOR 47 produced large numbers of colonies on tetracycline (933) and large numbers on kanamycin (545), but very few on tetracycline + kanamycin (19). Ten transconjugants from each selection regimen were analyzed in detail (Table 10). The transconjugants selected for resistance to both tetracycline and kanamycin are of two comparably frequent types: those with long single donor fragments and those split into at least two donor fragments, each including a selected marker. In each of the singly selected groups, one of the two-marker split types happens to appear (DK08, DT04).
Clearly, the donor DNA appears near the respective selected marker(s) in the foregoing experiment, and there is no reason to believe that the donor DNA nearer the origin of transfer is incorporated only very rarely. Although exonucleases are likely to play a role, the discrete fragments generated by restriction cleavage may also be incorporated frequently into different nascent chromosomes and segregate in subsequent cell divisions. Note that the conjugational backcross data (Table 3 and Table 8) show a smaller proportion of missing proximal donor DNA than do the original crosses. Thus, it seems likely that most of the missing donor DNA was actually lost after several cell divisions due to the lack of tetracycline resistance or kanamycin resistance. Indeed, sectoring at low frequencies has often been observed even in intrastrain crosses (e.g., by ![]()
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| DISCUSSION |
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Abridgment has now been demonstrated in a variety of conjugation experiments, including some that parallel the transduction crosses both in the strains used and in the region analyzed. Both reciprocal crosses and backcrosses to the respective recipient parental strains have also been made. Their results confirm and extend the evidence of the importance of restriction in natural recombination within E. coli, and they also have a bearing on the success frequency of more distant horizontal transfer.
The results of reciprocal crosses rule out DNA mismatch (at the 13% level) as a major cause of abridgment, since both crosses in a reciprocal set share a common mismatch (![]()
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Recombination among laboratory derivatives of strain K12 is not expected to be subject to restriction. ![]()
In the protection of backcross donor DNA against restriction, the central question is whether R-M genes are transferred in the original cross. In the transductional backcrosses discussed here, only a small region near trp is transferred, leaving the transductants identical to the recipient strain in restriction properties. Thus a backcross to the recipient should not involve restriction. Restriction in conjugational backcrosses depends on the position of the origin of transfer, the selected marker, and the extent of the DNA transferred. In our conjugations, the known restriction (-modification) loci were not ordinarily transferred, again resulting in the protection of DNA backcrossed to the recipient. However, BOYER's (1964) early experiments involved Hfrs with origins of transfer and selected markers that made transfer of the R-M loci probable. Thus Boyer's backcrosses to the donor strain enabled him to conclude correctly that "the genetic loci responsible for restriction and modification of DNA in strains K-12 and B in E. coli are located between the thr and pil [now fimBC] loci." This region is about 2 min in length.
Finally, the evident general rarity of recombination in E. coli is likely to be compensated by the formation of multiple small recombinogenic DNA fragments. These tend to separate the beneficial elements from deleterious ones, and this operation is especially effective if several nascent chromosomes are available to incorporate incoming DNA. If, for example, four alternative homologs are present and incoming DNA can invade in either of two directions, eight or more possible recombinant chromosomes can form, even if no subsequent recombination can take place before segregation. Note that the probability of any combination of incorporations is not the product of the probabilities of the respective individual incorporations. This is because all incorporations depend on a common prior event, the entry of donor DNA into the cell.
Separation of beneficial from deleterious elements should be especially important in lateral transfer of DNA from phylogenetically distant sources (![]()
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| ACKNOWLEDGMENTS |
|---|
We are grateful to Peter Kuempel, Mitchell Singer, and Erich Six for strains and advice, to Brooks Low for advice, to the E. coli Genetic Stock Center for strains, and to Tim Galitski, Jeffrey Lawrence, and John Roth for suggesting the importance of nascent chromosomes as alternative sites of incorporation for incoming DNA. This work was supported by grants MCB 9420613 and MCB 9728230 from the National Science Foundation to R.M.
Manuscript received February 12, 1999; Accepted for publication June 16, 1999.
| LITERATURE CITED |
|---|
ANKENBAUER, R. G., 1997 Reassessing forty years of genetics doctrine: retrotransfer and conjugation. Genetics 145:543-549[Medline].
BACHMANN, B. J., 1996 Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, pp. 24602488 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
BARCUS, V. A., and N. E. MURRAY, 1995 Barriers to recombination: restriction, pp. 3158 in Population Genetics of Bacteria, edited by S. BAUMBERG, J. P. W. YOUNG, E. M. H. WELLINGTON and J. R. SAUNDERS. Cambridge University Press, Cambridge, UK.
BARCUS, V. A., J. B. TITHERADGE, and N. E. MURRAY, 1995 The diversity of alleles at the hsd locus in natural populations of Escherichia coli.. Genetics 140:1187-1197[Abstract].
BERLYN, M. K. B., 1998 Linkage map of Escherichia coli K-12, edition 10: the traditional map. Microbiol. Mol. Biol. Rev. 62:814-984
BERLYN, M. K. B., K. B. LOW, K. E. RUDD and M. SINGER, 1996 Linkage map of Escherichia coli K-12, Edition 9, pp. 17151902 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
BERTANI, G. and J. WEIGLE, 1953 Host controlled variation in bacterial viruses. J. Bacteriol. 65:113-121
BICKLE, T. A. and D. H. KRÜGER, 1993 Biology of DNA restriction. Microbiol. Rev. 57:434-450
BLATTNER, F., G. PLUNKETT, III, C. BLOCH, N. T. PERNA, and M. RILEY et al., 1997 The complete genome sequence of Escherichia coli K-12. Science 277:1453-1462
BOYER, H., 1964 Genetic control of restriction and modification in Escherichia coli.. J. Bacteriol. 88:1652-1660
BOYER, H. W., 1971 DNA restriction and modification mechanisms in bacteria. Annu. Rev. Microbiol. 25:153-176[Medline].
DANIEL, A. S., F. V. FULLER-PACE, D. M. LEGGE, and N. E. MURRAY, 1988 Distribution and diversity of hsd genes in E. coli and other enteric bacteria. J. Bacteriol. 170:1775-1782
DUBOSE, R. F., D. E. DYKHUIZEN, and D. L. HARTL, 1988 Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli.. Proc. Natl. Acad. Sci. USA 85:7036-7040
FIRTH, N., K. IPPEN-IHLER and R. A. SKURRAY, 1996 Structure and function of the F factor and mechanism of conjugation, pp. 23772401 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
HANAHAN, D., 1983 Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580[Medline].
HEINEMANN, J. A., H. E. SCOTT, and M. WILLIAMS, 1996 Doing the conjugative two-step: evidence of recipient autonomy in retrotransfer. Genetics 143:1425-1435[Abstract].
HERZER, P. J., S. INOUYE, M. INOUYE, and T. WHITTAM, 1990 Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli.. J. Bacteriol. 172:6175-7181
JANULAITIS, A., R. KAZLAUSKIENE, L. LAZAREVICIUTE, R. GILVONAUSKEITE, and D. STEPANOVAVICIENE et al., 1988 Taxonomic specificity of restriction-modification enzymes. Gene 74:229-232[Medline].
KRÖGER, M. and R. WAHL, 1998 Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC. Nucleic Acids Res. 26:46-49
LAN, R. and P. R. REEVES, 1996 Gene transfer is a major factor in bacterial evolution. Mol. Biol. Evol. 13:47-55[Abstract].
LAWRENCE, J. G. and H. OCHMAN, 1997 Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44:383-397[Medline].
LAWRENCE, J. G. and J. R. ROTH, 1996 Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics 143:1843-1860[Abstract].
LLOYD, R. G. and C. BUCKMAN, 1995 Conjugational recombination in Escherichia coli: genetic analysis of recombinant formation in Hfr x F crosses. Genetics 139:1123-1148[Abstract].
LOW, K. B., 1996 Hfr strains of Escherichia coli K-12, pp. 24022405 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
MASTERS, M., 1996 Generalized transduction, pp. 24212441 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
MAYNARD SMITH, J., N. H. SMITH, M. O'ROURKE, and B. G. SPRATT, 1993 How clonal are bacteria? Proc. Natl. Acad. Sci. USA 90:4384-4388
MCKANE, M. and R. MILKMAN, 1995 Transduction, restriction and recombination patterns in Escherichia coli.. Genetics 139:35-43[Abstract].
MILKMAN, R., 1996 Recombinational exchange among clonal populations, pp. 26632684 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
MILKMAN, R., 1997 Recombination and population structure in Escherichia coli.. Genetics 146:745-750[Medline].
MILKMAN, R., 1999 Gene transfer in Escherichia coli, pp. 291309 in Organization of the Prokaryotic Genome, edited by R. L. CHARLEBOIS. American Society for Microbiology, Washington, DC.
MILKMAN, R., and M. MCKANE, 1995 DNA sequence variation and recombination in E. coli, pp. 127142, in Population Genetics of Bacteria, edited by S. BAUMBERG, J. P. W. YOUNG, E. M. H. WELLINGTON and J. R. SAUNDERS. Cambridge University Press, Cambridge, UK.
MILKMAN, R. and M. MCKANE BRIDGES, 1990 Molecular evolution of the E. coli chromosome. III. Clonal frames. Genetics 126:505-517. (See also Corrigendum. Genetics 126: 1139.)[Abstract].
MILKMAN, R. and M. MCKANE BRIDGES, 1993 Molecular evolution of the E. coli chromosome. IV. Sequence comparisons. Genetics 133:455-468[Abstract].
MILKMAN, R., D. CRYDERMAN, M. MCKANE, K. POHLMAN and E. A. RALEIGH, 1998 Evolutionary evidence for recombination among bacteria in nature: E. coli, pp. 226240 in Horizontal Transfer, edited by MICHAEL SYVANEN and CLARENCE I. KADO. Chapman and Hall, London.
MILLER, J. H., 1992 A Short Course in Bacterial Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
OCHMAN, H. and R. K. SELANDER, 1984 Standard reference strains of E. coli from natural populations. J. Bacteriol. 157:690-693
POVILIONIS, P. I., A. A. LUBYS, R. I. VAISVILA, S. T. KULAKAUSKAS, and A. A. YANULAITIS, 1989 Investigation of methyl-cytosine specific restriction in Escherichia coli K-12. Genetika 25:753-755. [In Russian][Medline].
PRICE, C. and T. A. BICKLE, 1986 A possible role for DNA restriction in bacterial evolution. Microbiol. Sci. 3:296-299[Medline].
RALEIGH, E., 1987 Restriction and modification in vivo by E. coli K12. Methods Enzymol. 152:130-141[Medline].
ROBERTS, R. J. and D. MACELIS, 1998 REBASErestriction enzymes and methylases. Nucleic Acids Res. 26:338-350
ROBERTS, R. J. and D. MACELIS, 1999 REBASErestriction enzymes and methylases. Nucleic Acids Res. 27:312-313
RUDD, K. E., 1998 Linkage map of Escherichia coli K-12, edition 10: the physical map. Microbiol. Mol. Biol. Rev. 62:985-1019
SASAKI, I. and G. BERTANI, 1965 Growth abnormalities in Hfr derivatives of E. coli strain C. J. Gen. Microbiol. 40:365-376[Medline].
SHARP, P., J. E. KELLEHER, A. S. DANIEL, G. M. COWAN, and N. E. MURRAY, 1992 Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria. Proc. Natl. Acad. Sci. USA 89:9836-9840
SINGER, M., T. A. BAKER, G. SCHNITZLER, S. M. DEISCHEL, and M. GOEL et al., 1989 A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.. Microbiol. Rev. 53:1-24
SMITH, G. R., 1991 Conjugational recombination in E. coli: myths and mechanisms. Cell 64:19-27[Medline].
WANNER, B. L., 1986 Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12. J. Mol. Biol. 191:39-58[Medline].
WHITTAM, T. S., 1996 Genetic variation and evolutionary processes in natural populations of Escherichia coli, pp. 27082720 in Escherichia coli and Salmonella Cellular and Molecular Biology, edited by F. C. NEIDHARDT. American Society for Microbiology, Washington, DC.
WORTH, L., JR., S. CLARK, M. RADMAN, and P. MODRICH, 1994 Mismatch repair proteins MutS and MutL inhibit RecA-catalyzed strand transfer between diverged DNAs. Proc. Natl. Acad. Sci. USA 91:3238-3241
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