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Centromere Mapping Functions for Aneuploid Meiotic Products: Analysis of rec8, rec10 and rec11 Mutants of the Fission Yeast Schizosaccharomyces pombe
Michelle D. Krawchuka and Wayne P. Wahlsaa Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146
Corresponding author: Wayne P. Wahls, Department of Biochemistry, Vanderbilt University School of Medicine, 621 Light Hall, Nashville, TN 37232-0146., wahlswp{at}ctrvax.vanderbilt.edu (E-mail)
Communicating editor: M. LICHTEN
| ABSTRACT |
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Recent evidence suggests that the position of reciprocal recombination events (crossovers) is important for the segregation of homologous chromosomes during meiosis I and sister chromatids during meiosis II. We developed genetic mapping functions that permit the simultaneous analysis of centromere-proximal crossover recombination and the type of segregation error leading to aneuploidy. The mapping functions were tested in a study of the rec8, rec10, and rec11 mutants of fission yeast. In each mutant we monitored each of the three chromosome pairs. Between 38 and 100% of the chromosome segregation errors in the rec8 mutants were due to meiosis I nondisjunction of homologous chromosomes. The remaining segregation errors were likely the result of precocious separation of sister chromatids, a previously described defect in the rec8 mutants. Between 47 and 100% of segregation errors in the rec10 and rec11 mutants were due to nondisjunction of sister chromatids during meiosis II. In addition, centromere-proximal recombination was reduced as much as 14-fold or more on chromosomes that had experienced nondisjunction. These results demonstrate the utility of the new mapping functions and support models in which sister chromatid cohesion and crossover position are important determinants for proper chromosome segregation in each meiotic division.
DURING meiosis each chromosome undergoes one round of DNA replication; homologous chromosomes then pair and undergo recombination. Subsequently, homologous chromosomes segregate from one another during meiosis I (MI) and then sister chromatids segregate from one another during meiosis II (MII). In most organisms, reciprocal recombination events (crossovers) help ensure proper MI segregation (![]()
Recent evidence suggests that the position of crossovers has an important role in chromosome segregation during both MI and MII. In several organisms, chromosomes that suffer spontaneous MI nondisjunction (MI NDJ) exhibit a preferential reduction of crossovers near the centromeres (![]()
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The rec8+, rec10+, and rec11+ genes of the fission yeast Schizosaccharomyces pombe were identified in a screen for mutations that decrease meiotic recombination (![]()
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| MATERIALS AND METHODS |
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S. pombe strains and culture media:
The S. pombe strains used for this study are listed in Table 1. Rich medium was yeast extract agar (YEA) or liquid (YEL); sporulation media was synthetic sporulation agar (SPA); minimal media was nitrogen base agar (NBA) or liquid (NBL). All media formulations and culture techniques were as described (![]()
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Mating and meiosis:
Strains to be crossed were grown at 32° in 5 ml of YEL to a density of 1 x 107 cells/ml. The cultures were combined, the cells were harvested by centrifugation, washed with water, resuspended in 100 µl of water, and spotted on SPA. The mating mixtures were incubated at room temperature for 35 days. Asci and vegetative cells were harvested into 0.5 ml of 0.5% glusulase and incubated at room temperature for 8 hr to liberate spores and kill vegetative cells. The suspensions were then treated with an equal volume of 60% ethanol for 30 min to kill any remaining vegetative cells. Spore suspensions were washed once with water, diluted, and plated on the appropriate media.
Diploid spore isolation and haploidization analysis:
Spores were plated on YEA-B and incubated for 3 days at 32° to distinguish the diploid spore colonies from the haploid spore colonies. On Phloxin-B-containing plates, haploid cells produce light pink colonies whereas diploid cells produce dark pink colonies (![]()
The parental haploid strains that were crossed had different alleles at several loci on all three chromosomes. The genotypes of the resulting diploid spore colonies were determined by analysis of haploidized colonies on diagnostic plates. Diploid spore colonies were haploidized with m-fluorophenylalanine (m-FPA; ![]()
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Development of mapping functions:
In a meiosis that generates four haploid products the centromeres undergo first division segregation (FDS). Loci unlinked to the centromere undergo second division segregation (SDS) 67% of the time. This is due to the statistical probability of the various patterns by which the unlinked alleles can enter the ascus. By extension, disomics or diploids arising from MI NDJ will be 100% heterozygous for the centromere and 67% heterozygous for unlinked loci. Likewise, disomics or diploids arising from MII NDJ will be 0% heterozygous for the centromere and 67% heterozygous for unlinked loci. The ![]()
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(1) |
where M is the genetic distance in Morgans (1M = 1 exchange) between two markers and RF is the fraction of recombinants. In the Haldane mapping function the RF reaches a theoretical maximum of 1/2 because of multiple recombination events: the second exchange event in a genetic interval restores the parental linkage of markers. As the genetic distance becomes large the probability of even numbers of crossovers (that remove recombinants) equals the probability of odd numbers of crossovers (that create recombinants). Hence, for two unlinked markers and a sufficiently large sample size the intermarker RF will reach a plateau of (1/2), which is the limiting multiplier in the Haldane equation.
In a similar fashion, the following equation relates diploid heterozygosity to genetic distance in those diploids arising from MII NDJ:
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(2) |
In this case, the RFheterozygous is the fraction of diploids that are heterozygous for the locus being studied and m is the genetic distance between the marker being studied and the centromere. (We apply a lowercase m for the genetic distance between a marker and the centromere to distinguish from the uppercase M used for the genetic distance between two markers.) Because of the way that alleles assort into the diploids, the heterozygosity resulting from MII NDJ can range from 0 to 67%, so the Haldane multiplier of 1/2 becomes 2/3, but the remainder of the equation is unchanged. By solving for m we can determine the genetic map distance of the locus from the centromere as a function of the frequency of heterozygosity in the MII NDJ diploids:
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(3) |
A similar equation describes the relationship between frequency of heterozygosity and genetic distance in those diploids arising from MI NDJ:
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(4) |
In this case, 1 - RFheterozygous is the fraction of diploids that are homozygous for the locus being studied. Because of the way that alleles assort into the diploids, the homozygosity values for MI NDJ diploids can range from 0% for the centromere to 33% for an unlinked marker. Thus, the Haldane multiplier of 1/2 becomes 1/3. Solving for m gives the MI NDJ diploid mapping function
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(5) |
For PSS during MI, followed by random assortment of all the chromatids in both meiotic divisions, 67% of the diploid meiotic products are expected to be heterozygous for the centromere. This is because the centromeres become essentially nonfunctional for segregation and thus partition into the diploids with the same statistical probability as the various patterns by which the unlinked alleles can enter the ascus. Therefore, no diploid mapping function can be derived for PSS events, because markers linked to the centromere and markers unlinked to the centromere will each yield the same fraction (67%) of heterozygous diploids.
| RESULTS AND DISCUSSION |
|---|
Centromere mapping functions for aberrantly segregated chromosomes:
In a normal (wild-type) meiosis, two rounds of chromosome segregation produce haploid meiotic products (Figure 1A). MI NDJ (Figure 1B), MII NDJ (Figure 1C), and PSS (Figure 1D) can be inferred from the segregation patterns of centromere-linked genetic markers. In S. pombe, most disomic aneuploids are unstable and cannot be readily studied (Figure 1E; ![]()
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The principle of centromere mapping (Figure 2, A and B), coupled with the genetic mapping function of ![]()
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The assay system:
As a test of our mathematical functions, we examined chromosome segregation patterns in diploid meiotic products from one mutant (rec8) with a known defect in MI segregation and two mutants (rec10 and rec11) with known defects in MII segregation (![]()
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MI NDJ in rec8 mutants:
In the rec8 mutants, the ade6 alleles on chromosome III were heterozygous in 85% of the meiotic diploids (Table 2). This value falls on the MI NDJ curve (Figure 2C) and is significantly higher than the frequency (67%) of heterozygosity expected as a result of PSS. Thus, the chromosome III segregation defect is unlikely the result of PSS alone, and some MI NDJ must have occurred. But how much? It is not possible to determine the precise value, but the mapping functions allow us to set the absolute limits. Three possible models are considered.
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Model 1, elevated recombination and 100% MI NDJ: Exclusively MI NDJ accompanied by some level of recombination might account for the data. Examination of the mapping functions (Figure 2C) or Equation 5 (MATERIALS AND METHODS) reveals that a genetic distance of 30 cM would produce the 85% heterozygosity that was observed (Table 2). In other words, a 2.5-fold increase in recombination relative to wild-type cells (Table 3) and 100% MI NDJ can explain the data. Recombination cannot have been increased by >2.5-fold, because this would further reduce the genetic linkage between centromere III and ade6, thereby producing a frequency of heterozygosity <85% (Figure 2C). However, 30 cM only defines the upper limit to the amount of recombination because some fraction of the homozygous diploids could have been generated by PSS and/or MII NDJ (Figure 1).
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Model 2, normal recombination and 7090% MI NDJ: In wild-type cells, ade6 is 12 cM from centromere III. Examination of the mapping functions (Figure 2C) or Equation 2 and Equation 4 (MATERIALS AND METHODS) can convert this into the frequency of heterozygosity at ade6 expected for each type of segregation error. Exclusively MI NDJ would produce 93% heterozygosity, exclusively MII NDJ would produce 14% heterozygosity, and exclusively PSS would produce 67% heterozygosity. One can determine algebraically what proportions of each would generate the observed 85% heterozygosity. Segregation errors of 70% MI NDJ and 30% PSS, or of 90% MI NDJ and 10% MII NDJ, would fit the data if recombination in the rec8 mutants occurred at wild-type levels. If both PSS and MII NDJ contribute to the segregation errors, then, depending upon their relative contributions, the frequency of MI NDJ would be somewhere between 70 and 90%.
Model 3, reduced recombination and 5585% MI NDJ: In the absence of recombination, ade6 would be genetically inseparable from centromere III. Exclusively MI NDJ would produce 100% heterozygosity, exclusively MII NDJ would produce 0% heterozygosity, and exclusively PSS would produce 67% heterozygosity. Thus, segregation errors of 55% MI NDJ and 45% PSS, or of 85% MI NDJ and 15% MII NDJ, would fit the data if centromere III-proximal recombination were absent in the rec8 mutants.
In summary, the mapping functions demonstrate that between 55 and 100% of the rec8 mutant meioses suffered MI NDJ of chromosome III. While the mapping functions cannot provide the precise frequency, we favor a combination composed predominantly of MI NDJ and PSS. Centromere-proximal recombination is reduced in the rec8 mutant meioses (![]()
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Similar results were obtained for the markers on chromosome II. In the rec8 mutants, the mat1 locus was heterozygous in 79% of the meiotic diploids (Table 2). This value falls on the MI NDJ curve (Figure 2C) and is significantly higher than the frequency (67%) of heterozygosity expected as a result of PSS. Exclusively MI NDJ accompanied by wild-type levels of recombination could account for the data (just on the edge of the 95% confidence interval). However, the mapping functions (Figure 2C) indicate that recombination is reduced two-fold or more between centromere II and mat1 (Table 3). Thus, the rec8 mutants suffer missegregation of chromosome II as a result of MI NDJ events accompanied by some level of PSS, MII NDJ, recombination, or some combination of the three. By the same rationale and types of calculations applied to the chromosome I data, the frequency of MI NDJ for chromosome II in the rec8 mutants must fall between 38 and 100%.
The chromosome I marker loci were heterozygous in 63% of the rec8 meiotic diploids (Table 2). The 95% confidence interval of the data encompasses an uninformative area at which the MI NDJ, PSS, and MII NDJ mapping functions converge. Exclusively MI NDJ accompanied by recombination, PSS, and exclusively MII NDJ accompanied by recombination would each produce ~67% heterozygosity (Figure 2C).
MII NDJ in rec10 mutants:
In the rec10 mutants the ade6 markers were heterozygous in 12% of the meiotic diploids (Table 2). This value falls on the MII NDJ curve (Figure 2C) and is significantly lower than the frequency (67%) of heterozygosity expected as a result of PSS. Thus, the rec10 mutants suffer some level of MII NDJ of centromere III. Exclusively MII NDJ accompanied by normal levels of recombination would produce 14% heterozygosity at ade6 (Figure 2C; MATERIALS AND METHODS, Equation 2), close to the observed value. The mapping functions also revealed an upper limit to the crossover frequency near that of wild-type meioses (Table 3), consistent with such a model. However, centromere-proximal recombination might be reduced much further, perhaps even eliminated, in the rec10 mutants. In that case, the observed 12% heterozygosity would be due to a low level of MI NDJ and/or PSS. Segregation errors of 82% MII NDJ and 18% PSS, or of 88% MII NDJ and 12% MI NDJ, would fit the data if centromere III-proximal recombination were absent. Therefore, the mapping functions demonstrate that between 82 and 100% of the rec10 mutant meioses suffer MII NDJ of chromosome III, and the precise value is dependent upon the relative additional contributions from recombination, MI NDJ, and PSS.
Nine percent of the rec10 mutant meiotic diploids were heterozygous for the mat1 locus on chromosome II (Table 2). Thus, the rec10 mutants suffer predominantly MII NDJ of chromosome II (Figure 2C). Interestingly, the maximum possible genetic distance in those meioses leading to aberrant segregation was 7.3 cM, which is 14-fold (or more) below that of wild-type cells (Table 3). In other words, centromere-proximal crossover recombination on chromosome II was reduced in those meioses with aberrant segregation. As discussed previously, the heterozygous diploids (9%) could be due to this residual recombination, to a low level of MI NDJ, to a low level of PSS, or to some combination of the three. By any of the models, between 87 and 100% of the rec10 mutant meioses suffer MII NDJ of chromosome II.
Similar observations and conclusions apply to the segregation patterns of chromosome I in the rec10 mutants (Table 2 and Table 3; Figure 2). A reduction of 10-fold (or more) in centromere-proximal recombination was observed in those meioses with aberrant segregation, and between 54 and 100% of the segregation errors are due to MII NDJ.
MII NDJ in rec11 mutants:
The results and conclusions for the rec11 mutants parallel those of the rec10 mutants (Table 2 and Table 3; Figure 2C). Each of the three chromosomes suffered MII NDJ of sister chromatids and centromere-proximal recombination was reduced at least eightfold and at least fivefold on chromosomes I and II, respectively, in those meioses with aberrant segregation. Between 47 and 100% (chromosome I), 66 and 100% (chromosome II), and 61 and 100% (chromosome III) of the segregation errors are due to MII NDJ.
Reduced centromere-proximal recombination in the rec8, rec10, and rec11 mutants:
Reduced centromere-proximal recombination was demonstrated for rec8 (chromosome II), rec10 (chromosomes I, II, and III), and rec11 (chromosomes I and II) mutant meioses with aberrant chromosome segregation (Table 3). Two studies of crossing over between pairs of markers have shown that recombination is reduced markedly near the centromeres of each of the three chromosomes in each of the rec8, rec10, and rec11 mutants, but recombination toward the telomeres occurs at nearly wild-type levels (![]()
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Cohesion, crossovers, and segregation:
It has been reported that the rec8+, rec10+, and rec11+ genes encode chromosome III-specific activators of recombination (![]()
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The utility of the mapping functions:
The new mapping functions permit the simultaneous analysis of centromere-proximal recombination and chromosome segregation defects. There are three principal advantages of these functions. First, it is not necessary for the marker to be tightly linked to the centromere in wild-type cells, nor is it even necessary to know the map distance between the marker and its centromere in wild-type cells. Any significant deviation from 67% heterozygosity in the meiotic aneuploids proves that the locus is linked to its centromere. Thus, one can readily map loci relative to the centromeres in mutant meioses or even in otherwise wild-type meioses with spontaneous nondisjunction events. Second, the frequency of heterozygosity provides a direct readout of the type of meiotic missegregation. Any significant deviation from 67% heterozygosity must be due to either MI NDJ or MII NDJ; the type of error and the lower limit to its magnitude can be read directly from the mapping functions (Figure 2C). And third, these functions may be applied to any organism in which diploid or disomic meiotic products can be studied. While it is easiest to visualize the derivation of the mapping functions for organisms with ordered tetrads (Figure 2), the functions will work equally well for organisms without ordered tetrads.
There are also three limitations to the new mapping functions. First, they only reveal the upper limit to the genetic distance between any given marker and its centromere (Figure 2C). Second, they only reveal the lower limit to the type of NDJ (Figure 2C). And third, it is not possible to map the distance between a marker and the centromere in those meioses that undergo predominantly PSS. Nevertheless, these functions can provide a better understanding of the relationship between meiotic recombination and chromosome segregation.
| ACKNOWLEDGMENTS |
|---|
We thank Aaron Graff, Jürg Kohli, Ning Kon, Michael Lichten, Gisela Mosig, and Wallace Sharif for helpful suggestions; Calley Hardin and Steve Lindsey for laboratory assistance; and Gerry Smith for providing yeast strains. This work was supported by a grant from the National Institutes of Health (GM54671) and by pilot project funds from the Vanderbilt University Research Council. M.D.K. was supported in part by a training grant from the National Institutes of Health (CA09582) and W.P.W. was a Leukemia Society of America Special Fellow (3021-94) for a portion of this research.
Manuscript received January 14, 1999; Accepted for publication May 27, 1999.
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