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Lesions in Many Different Spindle Components Activate the Spindle Checkpoint in the Budding Yeast Saccharomyces cerevisiae
Kevin G. Hardwick1,a,b, Rong Li2,b, Cathy Mistrota, Rey-Huei Chen3,a,b, Phoebe Danna, Adam Rudnera,b, and Andrew W. Murraya,ba Department of Physiology, University of California, San Francisco, California 94143-0444
b Department of Biochemistry and Biophysics, University of California, San Francisco, California 94143-0444
Corresponding author: Andrew W. Murray, Physiology Box 0444, UCSF, Parnassus Ave., San Francisco, CA 94143-0444., amurray{at}socrates.ucsf.edu (E-mail)
Communicating editor: D. BOTSTEIN
| ABSTRACT |
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The spindle checkpoint arrests cells in mitosis in response to defects in the assembly of the mitotic spindle or errors in chromosome alignment. We determined which spindle defects the checkpoint can detect by examining the interaction of mutations that compromise the checkpoint (mad1, mad2, and mad3) with those that damage various structural components of the spindle. Defects in microtubule polymerization, spindle pole body duplication, microtubule motors, and kinetochore components all activate the MAD-dependent checkpoint. In contrast, the cell cycle arrest caused by mutations that induce DNA damage (cdc13), inactivate the cyclin proteolysis machinery (cdc16 and cdc23), or arrest cells in anaphase (cdc15) is independent of the spindle checkpoint.
MITOSIS produces two daughter nuclei with identical genetic contents. To achieve this feat, cells have to delay chromosome segregation until all their chromosomes are correctly aligned on a bipolar spindle. Spindle assembly depends on the dynamic properties of microtubules nucleated by microtubule organizing centers (the spindle pole bodies in yeast), microtubule motors (reviewed in ![]()
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The spindle checkpoint has been analyzed genetically in budding yeast. The mitotic arrest deficient (mad; ![]()
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To determine which lesions in the spindle the MAD-dependent spindle checkpoint detects, we combined the mad1, mad2, and mad3 mutations with other mutations that affect spindle or function. These included mutations causing defects in microtubule polymerization (![]()
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| MATERIALS AND METHODS |
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Media and strains:
Media for yeast cultures and sporulation were as described (![]()
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Genetic techniques:
Standard techniques were used for yeast mating, sporulation, tetrad analysis, and
-factor treatment (![]()
Synthetic lethality:
These experiments were performed in one of two ways, either by crossing a haploid lacking a microtubule motor to a mad strain, or by using gene disruption to create heterozygosity for loss of a microtubule motor gene in a strain already heterozygous for a mad mutation. The latter method is more cumbersome, but it eliminates the possibility that slowly growing strains, such as kar3, will have acquired suppressor mutations.
Cell death assays:
The rate of cell death in mad cdc (cell division cycle) double mutants was determined as follows. A saturated culture was grown in YPD at 23°, and 0.1 ml was plated on a YPD plate and incubated for 2 days at 23°. Cells were collected by washing the plate with liquid YPD, diluted, and incubated at the nonpermissive temperature for the mutant. At the indicated times, appropriate dilutions of cultures were plated on YPD plates that were incubated for 35 days at room temperature before colony counting. This method was used because some of the mutants double so slowly at 23° that other methods of synchronizing the cells were ineffective. All figures are representative of experiments that were repeated at least three times.
| RESULTS |
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We investigated the types of mitotic lesions that activate the MAD-dependent checkpoint by studying the interaction of mad mutations with mutations that cause defects in the execution of particular steps of mitosis (Figure 1). These include mutations that inhibit microtubule depolymerization, prevent spindle pole body duplication, remove centromere-binding proteins, and cdc mutations that arrest cells in mitosis at 37°.
We tested mitotic mutations in two classes, conditional lethal mutations and null mutations in nonessential genes. Figure 2 shows the rationale for these experiments. To determine the interaction of mad mutations with cdc mutations that cause arrest in G2 or mitosis, the properties of the mad cdc double mutant were compared with that of the cdc mutant alone. If the cell cycle arrest of the cdc mutant is independent of the spindle checkpoint, the cdc mad double behaves exactly like the cdc mutant alone: the cell cycle arrests at the nonpermissive temperature, and the single and double mutants lose viability at the same rate when incubated at the nonpermissive temperature. In contrast, if the arrest of the cdc mutant depends on the spindle checkpoint, inactivation of the checkpoint will allow the mad cdc double mutants to pass through mitosis at the restrictive temperature even though the spindle is defective. In a haploid strain, initiating anaphase in cells that have not aligned their chromosomes properly on a bipolar mitotic spindle will lead to chromosome loss and generate dead cells. Thus, combining such cdc mutations with mad mutations will produce double mutants that fail to arrest in mitosis and lose viability faster than the cdc mutant alone when the strains are incubated at the nonpermissive temperature (Figure 2). A second test for whether the spindle checkpoint detects a defect is to examine the cell cycle progress. If the cell cycle arrest of a cdc mutant is suppressed in the mad cdc double mutant, the spindle checkpoint must be required for the arrest. This analysis is only meaningful if most of the cells in the starting population are viable and the degree of synchrony in the population is high. Unfortunately, for several of the mutations that do show genetic interactions with the mad mutations, the double mutants are difficult to synchronize, and populations of these strains contain many dead cells, even at the permissive temperature.
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A number of components of the spindle, such as individual microtubule motors, are not essential for cell viability (reviewed in ![]()
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Tubulin and spindle pole body mutants activate the spindle checkpoint:
The mad mutants were originally isolated as mutants that had increased sensitivity to benomyl, an inhibitor of microtubule polymerization. The mutants failed to arrest in mitosis and died rapidly when treated with benomyl (![]()
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Mutations that prevent spindle pole body duplication have no effect on microtubule polymerization, but they cause cells to assemble monopolar rather than the normal bipolar spindles. Two mutants, mps2 and cdc31, that have this phenotype arrest in mitosis, whereas a third, mps1, fails to arrest in mitosis despite the absence of a bipolar spindle (![]()
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We tested whether Mad proteins were needed to detect monopolar spindle mutations by combining the temperature-sensitive mps2-1 mutation with the mad1, mad2, or mad3 mutations and monitoring the rate of death at 37° as a measure of exit from mitosis. The single mps2-1 mutant arrests in mitosis and remains fully viable for at least 7 hr, when G1 stationary phase cells are inoculated into rich medium at 37°. All the mps2-1 mad double mutants, however, die rapidly, with 50% of the cells becoming inviable within 34 hr of incubation at 37° and 25% of the cells remaining viable at 7 hr (Figure 3B). This observation demonstrates that all the Mad proteins are required for cells to detect a monopolar spindle and arrest in mitosis as viable cells.
Microtubule motor defects activate the spindle checkpoint:
Microtubule motors move along the surface of microtubules, and genetic and cell biological experiments have implicated motors in many aspects of mitosis and meiosis in a wide variety of organisms. These include formation of a bipolar spindle (![]()
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We tested the interaction of microtubule motors and the spindle checkpoint by combining the kar3 and cin8 mutations with the mad1, mad2, and mad3 mutations. Diploids that were heterozygous for a mad mutation and a defect in a microtubule motor were sporulated and subjected to tetrad dissection. Because both mutations were marked by the insertion of standard genetic markers, the genotype of every spore could be unambiguously deduced from its pattern of growth on selective media. The results of this analysis are presented in Table 2. In all but one of the crosses (that between mad3 and cin8), fewer double-mutant spores were recovered than any other genotype. We tested the statistical significance of these findings in two ways. First, we tested whether the results we obtained were significantly different from those expected if all four genotypes were equally likely to survive. Second, we tested whether the viability of the double-mutant spores was less than the viability of the single mad mutant spores' viability multiplied by the viability of the spores lacking only the microtubule motor. Both tests indicated that the viability of the kar3 mad1, kar3 mad2, cin8 mad1, cin8 mad2, and cin8 mad3 double mutants was significantly less than expected, showing that viability of mutants lacking Kar3 or Cin8 is dependent on the integrity of the spindle checkpoint. For the kar3 mad3 double mutant, the low spore viability of the kar3 MAD3 spores makes it impossible to determine whether the viability of kar3 cells depends on Mad3.
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The absence of a kinetochore component activates the spindle checkpoint:
Many observations suggest that interactions between the kinetochore and the spindle microtubules play an important part in sensing the structure of the mitotic and meiotic spindles (reviewed in ![]()
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We assayed the interaction between kinetochore mutations and mad mutations. In our hands, none of the mutations in the essential components of the kinetochore (Ndc10, Ctf13, and Cbf3/Cep3; reviewed in ![]()
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The arrest of proteolysis-defective mutants is checkpoint independent:
Experiments in budding yeast and frog egg extracts support the idea that the spindle checkpoint prevents anaphase by inhibiting the activation of the cyclin proteolysis machinery (![]()
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We combined cdc23-1 and cdc15 with mad mutations and examined the phenotypes of the double mutants at the nonpermissive temperature (Figure 4A and Figure B). In all cases, the results were the same: the arrest phenotype of the double mutants was indistinguishable from that of the single proteolysis mutants.
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We also examined the interaction of the mad mutations with cdc20-1, which results in arrest in mitosis with increased numbers of microtubules. Cdc20 is a member of a conserved family of proteins that binds to the APC and plays an essential but poorly defined role in APC-mediated proteolysis (![]()
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A specific checkpoint arrests the cell cycles of cells whose DNA has been damaged (![]()
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| DISCUSSION |
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We have analyzed the defects that the spindle checkpoint detects. Cells with defects in microtubule polymerization or spindle pole body duplication die rapidly at the nonpermissive temperature if they lack the spindle checkpoint. Spores with defects in the checkpoint and microtubule motors or a kinetochore component survive at a greatly reduced frequency, suggesting that the survival of cells with these defects depends on the integrity of the spindle checkpoint. In contrast, mutations that inhibit the anaphase-promoting complex or activate the DNA damage checkpoint arrest the cell cycle independently of the spindle checkpoint. These observations confirm the original conclusion that the spindle checkpoint is restricted to monitoring the function of the mitotic spindle (![]()
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Benomyl and nocodazole treatments and the tub2-403 mutation all reduce the stability of yeast microtubules in both the spindle and the cytoplasm (![]()
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In contrast to the tub2-403 mutant or nocodazole-treated cells, the number of spindle microtubules in the cdc20-1 mutant is greater than that in wild-type cells (![]()
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Mutations that affect spindle pole body function can also activate the MAD-dependent checkpoint. mps2-1, a monopolar spindle mutant, arrests in mitosis, and mad mps2-1 double mutants die faster than mps1 mutants. Our attempts to test the interaction of the checkpoint with other spindle pole body mutations, such as cdc31 and ndc1, have been frustrated by the rapid diploidization of these mutant strains, which hampers genetic analysis. Mutations in Mps1, a protein kinase whose activity is required for spindle pole body duplication, also inactivate the spindle checkpoint (![]()
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Preventing microtubule polymerization or spindle pole body duplication leads to gross defects in spindle structure that clearly make normal chromosome segregation impossible. As a result, it has been possible to isolate conditional lethal alleles in genes involved in spindle pole body duplication and microtubule polymerization. In contrast, mutants that lack single microtubule motors are viable, suggesting that there is considerable overlap between the functions of different motors involved in spindle and chromosome segregation (![]()
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The final spindle component we examined was the kinetochore, the specialized structure that attaches chromosomes to microtubules. Evidence in insect spermatoctyes (![]()
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How many different aspects of the spindle does the spindle checkpoint monitor? If there were multiple detection systems that each monitored a single feature of the spindle, different checkpoint mutants could inactivate different detection systems, with the result that the different mutants would fail to respond to different subsets of spindle defects. For example, a mutation that inactivated surveillance of the spindle pole body but had no effect on kinetochore monitoring would not arrest the cell cycle in cells with unduplicated spindle pole bodies, but it would still arrest in response to defects at the kinetochore. We have not observed this type of qualitative specificity. The mad1, mad2, and mad3 mutations show similar interactions with a wide range of spindle defects. The only exception to this conclusion is the observation that mad3 mutations allow the survival of kar3 or cbf1 mutants, whereas the mad1 and mad2 mutations do not. This result is not easy to interpret. In a quantitative assay, interactions of different strengths can easily be compared with each other. In a qualitative assay, however, such as the assessment of whether two mutations are synthetically lethal with each other, a continuous variable (the strength of the interaction between two mutations) is converted into an all-or-none output. Thus, there are two possible interpretations of the observation that mad3 is not synthetically lethal with kar3 or cbf1: (i) compared to wild-type cells, mad3 reduces the delay that these mutations cause, but the reduced delay is still sufficient to allow a colony to grow; or (ii) the delay these mutations cause is the same as that in wild-type cells. Distinguishing between these possibilities is likely to require conditional alleles of checkpoint genes.
Although we cannot rule out the future discovery of mutants that fail to respond to a specific spindle defect, we favor the idea that the spindle checkpoint monitors only one aspect of the spindle, the interaction between kinetochores and microtubules. Three arguments support this hypothesis. The first is that defects in microtubule polymerization, formation of a bipolar spindle, microtubule motors, and the kinetochore will all impair the ability of the kinetochore to capture and move along microtubules. The second is that the ndc10-1 mutation, which disrupts kinetochore function, abolishes the ability of nocodazole to arrest the budding yeast cell cycle (![]()
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| FOOTNOTES |
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1 Present address: Institute of Cellular and Molecular Biology, University of Edinburgh, Edinburgh EH9 3JR, Scotland. ![]()
2 Present address: Cell Biology, Harvard Medical School, Boston, MA 02115. ![]()
3 Present address: Biochemistry, Molecular and Cell Biology, Cornell University, Ithaca, NY 14853. ![]()
| ACKNOWLEDGMENTS |
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We thank Lee Hartwell, Dan Burke, Mark Winey, Eric Weiss, Tim Stearns, Pamela Forman, and members of the Murray lab for supplying strains, plasmids, and helpful discussions. We are grateful for the helpful comments of two anonymous reviewers. This work was supported by grants from the National Institutes of Health, the Human Frontiers in Science Program, the Markey Charitable Trust, the Packard Foundation, and the March of Dimes.
Manuscript received August 28, 1998; Accepted for publication March 11, 1999.
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