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Genomic Imprinting and Position-Effect Variegation in Drosophila melanogaster
Vett K. Lloyd1,a, Don A. Sinclair2,a, and Thomas A. Grigliattiaa Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
Corresponding author: Thomas A. Grigliatti, Department of Zoology, University of British Columbia, 6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada., grigliat{at}zoology.ubc.ca (E-mail)
Communicating editor: R. S. HAWLEY
| ABSTRACT |
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Genomic imprinting is a phenomenon in which the expression of a gene or chromosomal region depends on the sex of the individual transmitting it. The term imprinting was first coined to describe parent-specific chromosome behavior in the dipteran insect Sciara and has since been described in many organisms, including other insects, plants, fish, and mammals. In this article we describe a mini-X chromosome in Drosophila melanogaster that shows genomic imprinting of at least three closely linked genes. The imprinting of these genes is observed as mosaic silencing when the genes are transmitted by the male parent, in contrast to essentially wild-type expression when the same genes are maternally transmitted. We show that the imprint is due to the sex of the parent rather than to a conventional maternal effect, differential mitotic instability of the mini-X chromosome, or an allele-specific effect. Finally, we have examined the effects of classical modifiers of position-effect variegation on the maintenance and the establishment of the imprint. Factors that modify position-effect variegation alter the somatic expression but not the establishment of the imprint. This suggests that chromatin structure is important in maintenance of the imprint, but a separate mechanism may be responsible for its initiation.
GENOMIC imprinting is a phenomenon whereby a gene or a region of a chromosome is reversibly modified so that it retains a "memory" of its own genetic history. The term imprinting was originally coined to refer to the complex behavior of the X chromosome in the dipteran insect Sciara (![]()
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Imprinting phenomena have been recognized and studied in Drosophila for more than 50 years, albeit under the name of parental effects (Table 1). Curiously, all but one of the reported parental effects involved chromosome rearrangements that exhibit position-effect variegation (Table 1 and Figure 1). The one mutation not associated with position-effect variegation (Uab1) involves the Bithorax complex, which is regulated by chromatin-induced gene silencing (reviewed by ![]()
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This article describes genomic imprinting of at least three genes on a mini-X chromosome in D. melanogaster. The imprinting phenomenon we describe has all of the, now classical, features of genomic imprinting: The imprint, once set, is mitotically stable, generating distinct clonal regions, but is reversed by passage through meiosis, and the imprinted region encompasses more than one gene and involves the formation of aberrant chromatin structures. Using this mini-X chromosome we have tested, and eliminated, a number of factors that might cause phenotypes that resemble genomic imprinting. Our findings suggest that the immediate cause of the imprinted expression of genes on the mini-X chromosome is parent-specific invasion of heterochromatin from an imprinted region of centric heterochromatin. To further assess the role of heterochromatin in the imprinting process, we have tested the stability of the imprint in this region using chemical, environmental, and genetic modifiers of position-effect variegation, all of which are believed to influence heterochromatin formation and integrity. These modifiers alter the somatic expression or maintenance of the imprinted state of these genes, but do not alter the initial decision of whether or not the gene is imprinted. This implies that altered chromatin structure is involved in the somatic memory of the imprint, but does not necessarily determine the imprint. Thus, the imprinting decision may be under independent genetic control.
| MATERIALS AND METHODS |
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All crosses were performed at 22° unless stated otherwise. Culture media was standard cornmeal/yeast/sugar media supplemented with tegosept as a mold inhibitor. Crosses were generally carried out in 8-dram shell vials with groups of three to five virgin females and two to five males per vial. Each vial was subcultured once at a 1-wk interval before the parents were discarded and each experiment was replicated four to six times in two different groups separated by at least 1 mo to control for environmental effects such as variation in media, temperature, humidity, and so forth. The results of the replicate experiments were combined as there were no differences between them.
Mutant strains:
All mutant strains are described in ![]()
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Expression of garnet, tiny, and narrow abdomen:
The level of expression of the genes garnet (g), tiny (ty), and narrow abdomen (na) was assessed visually using an arbitrary scoring system. Each fly was assigned a score of 0, 1/2, or 1 on the basis of whether it expressed an extreme mutant, a moderate mutant, or a wild-type phenotype, respectively. The value for the average phenotype was then obtained by dividing the cumulative score by the total number of flies. Thus the value is expressed as a proportion of 1 (full wild-type expression) plus or minus the standard error of the mean. A fly was scored as ty if its bristles appeared severely Minute. In practice this meant approximately half the length of regular bristles on the sibs. A fly was scored as na if the abdomen appeared exceptionally long and thin. As this is a rather subjective measurement the crosses were scored by one investigator (V.K.L.) always comparing flies grown under the same conditions (i.e., on the same set of media at the same time). The crosses were scored as a single blind experiment. A fly was scored as mutant for garnet if its eyes were completely or extensively variegated. In addition to visual scoring, the expression of the garnet gene was quantified by measuring the amount of pigment in the eyes as described in ![]()
Malpighian tubules:
Malpighian tubules were dissected from wandering third instar larvae of the correct sex and genotype, placed in water, and immediately photographed. Wild-type Malpighian tubules are always uniformly pigmented, unless damaged in removal.
Crosses:
Parental-effect crosses:
Individuals with a maternally derived mini-X chromosome were generated by crossing XX/Dp(1;f)LJ9 females to y za g53d/Y, na/Y or ty/Y males to generate g/Dp(1;f)LJ9 or na/Dp(1;f)LJ9 or g2 ty/Dp(1;f)LJ9 male progeny. In the first case, yellow (y1) is used to monitor the presence of the mini-X chromosome without bias as to eye phenotype, and zeste (za) lightens the background garnet (g53d) eye color. Individuals with maternally or paternally derived mini-X chromosomes will be designated as Dp(1;f)LJ9MAT or Dp(1;f)LJ9PAT, respectively. Individuals with a paternally derived mini-X chromosome (Dp(1;f)LJ9PAT) were generated by mating attached XY males carrying the Dp(1;f)LJ9 mini-X chromosome (XY/Dp(1;f)LJ9) to females homozygous for the same yellow, zeste, and garnet alleles described above or to na/In(1)dl49 or g2 ty/In(1)dl49 females. The genotypically identical y za g53d/Dp(1;f)LJ9 or na/Dp(1;f)LJ9 or g2 ty/Dp(1;f)LJ9 males were compared to those resulting from the maternal cross. The crosses used most frequently to detect parental effects on expression of the garnet gene are diagrammed in Figure 1B. To generate female progeny with the mini-X chromosome the following crosses were performed: For the maternal cross, y za g53d/y za g53d/Dp(1;f)LJ9 females were crossed with y za g53d/Y males to produce y za g53d/y za g53d/Dp(1;f)LJ9MAT female progeny. For the paternal cross, y za g53d/y za g53d females were crossed with y za g53d/Y/Dp(1;f)LJ9 males to produce the genotypically identical y za g53d/y za g53d/Dp(1;f)LJ9PAT female progeny. y za g53d/Dp(1;f)LJ9PAT and y za g53d/Dp(1;f)LJ9PAT/Y progeny were identified by fertility testing. Sterile males were assumed to be the X/Dp(1;f)LJ9 genotype.
Meiotic and mitotic stability of the mini-X chromosome: The meiotic stability of the mini-X chromosome was monitored by examining the progeny of the garnet parental effect crosses (Figure 1B) for exceptional individuals. Mitotic stability was monitored by checking for yellow patches (loss of the mini-X chromosome), on a wild-type background, in the cuticle of the y za g53d/Dp(1;f)LJ9 males.
Maternal effects:
We tested for a direct maternal effect of the garnet gene by determining the amount of pigment in homozygous daughters (y za g53d/y za g53d) and hemizygous sons (y za g53d/Y) derived from garnet homozygous vs. heterozygous females (y za g53d/y za g53d vs. y za g53d/+ + +
y za g53d/Y).
We tested for the effect of maternal-effect modifiers of position-effect variegation by comparing the genotypically identical y za g53d/Dp(1;f)LJ9PAT male progeny derived from females without the Dp(1;f)LJ9 mini-X chromosome (Figure 1B, maternal cross) vs. females bearing but not transmitting the Dp(1;f)LJ9 mini-X chromosome (y za g53d/y za g53d/Dp(1;f)LJ9
XY/Dp(1;f)LJ9). As two mini-X chromosomes are lethal due to the presence of a male diplo-lethal region (![]()
Test for allele specificity of the imprinting effect: To determine if other garnet alleles showed the same pattern of imprinting effects, the y za g53d chromosome was replaced with y za g50e, y e(g) cv g2, g1, g3, g4 m, g61, or with gS3.
Test for direct effect of Y chromosome:
To determine if the presence of a Y chromosome would induce variegation of the garnet gene in the Dp(1;f)LJ9 mini-X chromosome, females, with and without a Y chromosome, transmitting a normally nonvariegating, mini-X chromosome, were crossed to the y za g53d/Y test males. The cross to produce females without a Y chromosome is as shown in Figure 1B (maternal cross). The cross to produce females with a Y chromosome is as follows: XX/Dp(1;f)LJ9
y za g53d/Y
XX/Y/Dp(1;f)LJ9
y za g53d/Y
y za g53d/Dp(1;f)LJ9. X/Dp(1;f)LJ9 and X/Y/Dp(1;f)LJ9 progeny were separated by testing for fertility. Sterile males were assumed to be X/Dp(1;f)LJ9.
Effect of modifiers of position-effect variegation on imprinting: The effect of sodium butyrate and developmental temperature on the variegation (maintenance) and imprinting (establishment) on garnet expression was determined by replicating the parental-effect cross (Figure 1B) on media supplemented with various concentrations of sodium butyrate, or at 18°, 22°, 25°, and 29°, respectively. To test the effect of these modifiers on the variegation (maintenance of the imprint), the y za g53d/Dp(1;f)LJ9 progeny were raised under the experimental conditions. To test the effect of the modifiers on imprinting (establishment), the parents were raised under the experimental conditions and their untreated y za g53d/Dp(1;f)LJ9 progeny were assayed. To test the effect of butyrate and temperature on the expression of the g50e allele an analogous set of experiments was done in which the y za g53d chromosome was replaced with y za g50e. The effect of butyrate on the variegation of the conventional euchromatic variegator, In(1)wm4, was used to monitor the effectiveness of the treatment. Variegation of In(1)wm4 males and females ranged from 1 ± 1 and 14 ± 3%, respectively, at 0 mM butyrate to 18 ± 6 to 23 ± 3% wild-type gene expression, respectively, at the test concentration of 200 mM butyrate. Higher concentrations were lethal. To monitor nonspecific effects (such as effect on fly or eye size) of both butyrate concentration and temperature, pigment levels of the phenotypically wild-type siblings were determined. Increasing levels of sodium butyrate did decrease both fly size and viability; pigment levels of the phenotypically wild-type XX/Dp siblings ranged from 98 ± 4% at 0 mM butyrate to 87 ± 3% at 200 mM butyrate. Hence, the experimental pigment values were adjusted by expressing pigment levels relative to these garnet+ sibs reared on the same butyrate-containing media. No such effects were noted for the temperature experiments. However, there is limited information for the 29° series of paternal crosses as the XY/Dp males were generally sterile when raised at this temperature.
The effect of extra heterochromatin, in the form of an additional Y chromosome, was monitored by introducing an extra Y chromosome into y za g53d/Dp(1;f)LJ9 individuals in which the mini-X chromosome was derived either maternally or paternally. In the maternal cross XX/Y/Dp(1;f)LJ9
y za g53d/Y
y za g53d/Dp(1;f)LJ9MAT and y za g53d/Dp(1;f)LJ9MAT/Y, these progeny were separated by fertility testing. Sterile males were assumed to be X/Dp(1f)LJ9. In the paternal cross y za g53d/Y/Dp(1;f)LJ9
y za g53d/y za g53d
y za g53d/Dp(1;f)LJ9PAT and y za g53d/Dp(1;f)LJ9PAT/Y, progeny were separated by fertility testing and sterile males were assumed to be X/Dp(1;f)LJ9.
The effect of extra heterochromatin in parents was determined in four ways: by adding an extra Y chromosome in the male and female parents, both with and without the Dp(1;f)LJ9 mini-X chromosome. In all cases the results were assessed by visual inspection and by microflourimeter pigment assays.
- Set 1: To determine if an additional Y chromosome in the mini-X chromosome-bearing father affected imprinting, genotypically identical y za g53d/Dp(1;f)LJ9PAT progeny were generated from XY + Dp(1;f)LJ9 and in separate, concurrent crosses, XYY + Dp(1;f)LJ9 fathers. [XX/Dp(1;f)LJ9
XY (any male)
XX/Y/Dp(1;f)LJ9
XY/Dp
XY/Dp(1;f)LJ9 or XY/Y/Dp(1;f)LJ9
y za g53d/y za g53d
y za g53d/Dp(1;f)LJ9PAT. y za g53d/Dp(1;f)LJ9PAT progeny were distinguished from their y za g53d/Dp(1;f)LJ9PAT/Y siblings by fertility testing.] - Set 2: To determine if an extra Y chromosome in mini-X chromosome-bearing mothers affected imprinting, genotypically identical y za g53d/Dp(1;f)LJ9MAT progeny were generated from XX + Dp(1;f)LJ9 and, in separate, concurrent crosses, XXY + Dp(1;f)LJ9 mothers. [XX/Dp(1;f)LJ9
any male
XX/Y/Dp(1;f)LJ9 vs. XX/Dp(1;f)LJ9
y za g53d/Y
y za g53d/Dp(1;f)LJ9MAT. y za g53d/Dp(1;f)LJ9MAT progeny were distinguished from their y za g53d/Dp(1;f)LJ9MAT/Y siblings by fertility testing.] - Set 3: To determine if an extra Y chromosome has an effect in the male parent in the absence of the mini-X chromosome, genotypically identical y za g53d/Dp(1;f)LJ9MAT progeny were generated from XY (no mini-X chromosome) and in separate, concurrent crosses, XYY (no mini-X chromosome) fathers. [XY/0
XX/Y
XY/0 vs. XY/Y
y za g53d/y za g53d/Dp(1;f)LJ9
y za g53d/Dp(1;f)LJ9MAT. y za g53d/Dp(1;f)LJ9MAT progeny were distinguished from their y za g53d/Dp(1;f)LJ9MAT/Y siblings by fertility testing.] - Set 4: To determine if an extra Y chromosome has an effect in the female parent unrelated to the mini-X chromosome, genotypically identical y za g53d/Dp(1;f)LJ9PAT progeny were generated from XX (no mini-X chromosome) and in separate, concurrent crosses, from XXY (no mini-X chromosome) mothers. [XY/Dp(1;f)LJ9
y za g53d/y za g53d
y za g53d/XY vs. y za g53d/y za g53d
XY/Dp(1;f)LJ9
y za g53d/Dp(1;f)LJ9PAT. y za g53d/Dp(1;f)LJ9PAT progeny were distinguished from their y za g53d/Dp(1;f)LJ9PAT/Y siblings by fertility testing.]
| RESULTS |
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garnet+ expression on the mini-X chromosome is imprinted:
The expression of the garnet+ gene on the Dp(1;f)LJ9 mini-X chromosome depends on its parental origin. When females carrying the mini-X chromosome (XX/Dp(1;f)LJ9) are crossed to y za g53d/Y males, the y za g53d/Dp(1;f)LJ9 male progeny appear wild type. This is the expected phenotype because the mini-X chromosome carries the wild-type genes for yellow and garnet. In contrast, in the reciprocal cross (males carrying the mini-X chromosome crossed to females of the same y za g53d strain; Figure 1B), the wild-type garnet gene on the mini-X chromosome is variably silenced in the genotypically identical y za g53d/Dp(1;f)LJ9 sons (Figure 2). The inactivation appears complete at the cellular level but not necessarily at the tissue level, so the phenotype is often a mosaic. In most cases the gene was expressed in zero, one, two, or three large wild-type spots (garnet+) on the pale orange background color with occasional single pigmented ommatidium. The large spots appeared to correspond to clonally related regions of the eye (![]()
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The parent-dependent expression of garnet gene on this mini-X chromosome is not limited to the eye. Examination of Malpighian tubules in individuals bearing maternally vs. paternally derived mini-X chromosomes demonstrates that the expression of the garnet+ gene in this tissue is also dependent on the parental origin of the mini-X chromosome. Malpighian tubules from individuals with a maternally derived mini-X chromosome usually have no unpigmented spots, although we have found up to three unpigmented regions in some individuals of this genotype. In contrast, the Malpighian tubules of genotypically identical individuals with a paternally derived mini-X chromosome show extensive variegation (Figure 3).
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Imprinted expression of narrow abdomen and tiny:
The imprinting effect is not restricted to the garnet gene. The closely linked genes narrow abdomen and tiny also show differential expression depending on the parental origin of the mini-X chromosome. When the mini-X chromosome was derived from the father, the wild-type gene on the mini-X chromosome showed variable mutant expression (Figure 4A and Figure B), whereas, when the mini-X chromosome was maternally inherited, the genotypically identical progeny (na/Dp(1;f)LJ9 or ty/Dp(1;f)LJ9) were more wild type for body and bristle morphology, respectively. Thus the imprinting of the genes narrow abdomen and tiny is similar to that of the garnet gene with expression compromised when the mini-X chromosome is transmitted by the male parent (Table 2). Interestingly, the magnitude of this effect (the relative difference in gene expression between maternally and paternally transmitted mini-X chromosomes) appears to diminish for the more distally located genes. Thus, the same genomic imprinting effect seems to encompass at least three genes in the small euchromatic portion of the mini-X chromosome and this effect appears to spread from the region of centric heterochromatin.
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The imprint is a response to the sex of the parent:
In Drosophila, the entirely heterochromatic Y chromosome is a potent modifier of position-effect variegation, as well as several other processes (![]()
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The imprinted expression of genes on the mini-X chromosome is not due to chromosome loss, maternal effects, or allele-specific interactions:
The parent-specific silencing of the garnet+ gene could be a consequence of genomic imprinting, or, alternatively, it could result from chromosome loss or masking of the mutant phenotype by a maternal effect, or it might merely reflect an allele-specific phenotypic oddity. Chromosome loss was monitored by testing the stability of the mini-X chromosome through both meiotic and mitotic cell divisions. We found that the mini-X chromosome disjoins regularly from an attached XY chromosome in males; the nondisjunction rate is 0.10.3% (n = 1546). The rate of nondisjunction of the mini-X from an attached XX chromosome during meiosis in females is higher: 16% (n = 745). This presumably represents segregation via the aschiasmate (distributive) segregation system. As mitotic nondisjunction might generate patches of mutant tissue resembling those seen in the progeny of males transmitting the mini-X chromosome, we also examined the mitotic segregation of the mini-X chromosome. Because the mini-X chromosome is yellow+, mitotic nondisjunction was monitored by looking for mosaic patches of yellow tissue in a wild-type background, in a fly bearing a mutant yellow gene on its normal X chromosome. Only two instances of mosaicism (both bilateral mosaics) were observed in over 10,000 flies. Therefore we conclude that mitotic nondisjunction does not occur at an appreciable rate, at least in the integument. These data indicate that the mini-X chromosome is transmitted faithfully through both meiosis and mitosis. Therefore, the mosaic expression of the garnet+ gene in the eye and Malpighian tubules is probably not due to either meiotic nondisjunction or mitotic loss of the mini-X chromosome.
Maternal effects:
The apparent repression of garnet, narrow abdomen, and tiny genes in those individuals who inherit the mini-X chromosome from their male parent could reflect a long perduring maternal effect rather than genomic imprinting. In this scenario, the garnet+, tiny+, and narrow abdomen+ genes on the mini-X chromosome would have to variegate, more or less equally, regardless of parental origin, but the female parent would deposit wild-type product into the egg cytoplasm to mask this variegation in the affected offspring. As the only wild-type alleles of these three genes in these crosses are on the mini-X chromosome, the result would mimic a classical imprinted phenotype. While this is formally possible, it is highly unlikely in the crosses described here. This hypothesis requires that the garnet, narrow abdomen, and tiny genes all display maternal effects. The garnet gene is genetically well characterized, and of the more than 40 alleles examined, none has been reported to have a maternal effect (![]()
Maternal-effect modifiers and physiological compensation:
Another possible explanation for the imprinted effect is a form of physiological compensation. Such "physiological compensation" models have been proposed to account for the imprinted effect in maternal diabetes and maternal phenylketonuria and a paternal "imprint" in phenylketonuria, congenital hypothyroidism (![]()
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Allele-specific effects: Finally, to test the possibility that the garnet imprint phenotype reflects peculiar properties of the g53d allele used in these studies, seven other garnet alleles (g1, g2, g3, g4, g50e, g61, gS3) were examined. These all showed a similar parent-dependent mosaicism (Table 3 for g50e and data not shown). Thus an allele-specific effect does not appear to explain the imprinted phenotype.
Position-effect variegation and imprinting:
The preceding data rule out a number of more trivial causes for the parental effects on the expression of garnet. Therefore we attribute the gene silencing associated with the paternal inheritance of the mini-X chromosome to traditional genomic imprinting.
Two questions arise. First, what causes the original imprint? And second, how is the genomic imprint propagated? There is no a priori reason why the initiating or determinative event and the propagation of the original imprint must be controlled by the same mechanism. The initiating event and its propagation are separated in time and tissue type; that is, the initiation presumably takes place in the germ line of the male or female parent, and the propagation occurs in the somatic tissues of the offspring. Thus each event might be expected to be controlled by a distinct mechanism. Therefore, we attempted to analyze both the initiation event of imprinting and its propagation independently, so we can ask if factors that affect the propagation of the imprint also affect the initiation and vice versa.
The clonal pattern of the garnet silencing that we observe in imprinted individuals is strongly reminiscent of position-effect variegation, as is the variable hypomorphic expression of the genes tiny and narrow abdomen. The distal centric heterochromatin was likely broken and deleted when the mini-X chromosome was generated because the most proximal euchromatic genes adjacent to the centric heterochromatin are deleted from the mini-X chromosome (data not shown). Thus, the mini-X chromosome might be expected to variegate for the genes, g+, ty+, and na+. However, position-effect variegation does not usually show parental effects (![]()
Three general groups of factors influence position-effect variegation: chemical factors such as sodium butyrate; environmental factors such as temperature; and genetic factors such as the presence of extra heterochromatin in the cell, usually in the form of an additional Y chromosome. Butyrate has been shown to inhibit histone deacetylases and thus presumably acts directly on chromatin structure (![]()
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In every case tested, the factors that modified classical position-effect variegation also modified the variegation associated with the genomic imprinting of the mini-X chromosome (see Table 3 for the effect of temperature, Table 4 for the effect of butyrate, and Table 5 for the effect of extra Y-chromosome heterochromatin). The addition of butyrate to the medium and higher culture temperature during development influence the expression of the "imprinted" garnet gene. Curiously, the direction of the effect of both butyrate and temperature on the expression of the "imprinted" garnet is opposite to their usual effects on variegating euchromatic loci [high levels of butyrate and high temperatures generally suppress the inactivation; that is, they restore a more wild-type phenotype to variegating euchromatic loci (![]()
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We next addressed the question of whether these modifiers of position-effect variegation influenced the initial generation of the imprint or simply the maintenance of the imprint. Because the imprinting of the mini-X chromosome is determined solely by the sex of the parent, we could address this issue by testing the effect of the various modifiers of position-effect variegation when present in the parents vs. their offspring. Interestingly, with the possible exception of butyrate, none of these factors perceptibly alters the imprint (see Table 6 for the effect of temperature, Table 7 for the effect of butyrate, and Table 8 for the effect of the Y chromosome). This is particularly evident in the case of an additional Y chromosome. Addition of extra heterochromatin, in the form of an extra Y chromosome in either the male or female parent, with or without the mini-X chromosome, had no impact on the genomic imprint. In contrast, the presence of an additional Y chromosome in the progeny can essentially abolish the manifestation of the genomic imprint (the variegation). Therefore, the presence of extra heterochromatin in the zygote either alters the somatic memory of the imprint or alters the expression of the imprinted gene(s) at the time of transcription. These data suggest that the somatic memory or propagation of the genomic imprint is maintained by the same process, or processes, which cause(s) position-effect variegation, likely chromatin formation. But the genomic imprint itself may be established by another process.
| DISCUSSION |
|---|
The Dp(1;f)LJ9 mini-X chromosome of D. melanogaster exhibits genomic imprinting of at least three genes. The imprint is manifest as mosaic repression of these genes when the mini-X chromosome is inherited from the male parent. In contrast, when the mini-X chromosome is inherited from the female parent, expression of these genes is essentially wild type, leading to no, or to a very low level of, mosaicism in the genotypically identical progeny. The genomic imprinting we observe with the mini-X chromosome is manifested as a mosaic of gene silencing. Indeed, this mosaicism is found in all previously reported examples of genomic imprinting in Drosophila (see Table 1 for references) as well as in maize (![]()
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Our data suggest that the mechanism that establishes the original genomic imprint may differ from the mechanism that propagates the imprint in the somatic tissues of the affected offspring. One way to determine the mechanism by which the genomic imprint is established in Drosophila would be to isolate genetic modifiers of the imprinting process. Some progress has been made in detecting genes that influence imprinting in mice (![]()
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The underlying basis and mechanism of genomic imprinting, among invertebrates as well as vertebrates, is of considerable interest. We focused on the role of heterochromatin in both the initiation and somatic propagation of the imprint for several reasons. The clonally variegated phenotype of the imprinted garnet gene and the variable hypomorphic expression of the narrow abdomen and tiny genes are highly reminiscent of position-effect variegation, a process generally associated with aberrant heterochromatin formation and spread. Also, the gradient of gene silencing, from proximal to distal, away from the centromeric heterochromatin, resembles the spreading of gene silencing observed in position-effect variegation (![]()
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In the case we report here it is clear that the genomic imprint is a property of the placement of these genes near an imprinted region of centric heterochromatin on the mini-X chromosome, rather than an intrinsic property of the genes themselves, because none of these genes show parent-dependent expression in their normal chromosomal position (![]()
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In eutherian mammals and plants, DNA methylation has long been known to be linked to gene inactivation. While DNA methylation patterns correlate with genomic imprinting and are essential for maintenance of the imprint (![]()
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| FOOTNOTES |
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1 Present address: Department of Biology, Dalhousie University, Halifax, Nova Scotia B3H 4J1, Canada. ![]()
2 Present address: Institute of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada. ![]()
| ACKNOWLEDGMENTS |
|---|
We thank M. Axford for first bringing the variegation of the garnet gene on the Dp(1;f)LJ9 mini-X chromosome to our attention. We also thank J. Berger for use of the quantitative microscopy facility, D. Baillie and C. Laird for invaluable discussions, and D. Campbell for comments on the manuscript. The Dp(1;f)LJ9 stock was generously provided by J. Waring. We thank the Bowling Green and Indiana Drosophila stock centers for all other stocks. The work was supported by Natural Sciences and Engineering Research Council (NSERC) operating grant A-3005 to T.A.G.
Manuscript received August 10, 1998; Accepted for publication January 8, 1999.
| LITERATURE CITED |
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, na+). The individual on the left bears a paternally derived mini-X chromosome whereas the genotypically identical fly on the right has a maternally derived mini-X chromosome. Arrows point to the abdomen, which is considerably more extended (more mutant) in the flies bearing a paternally derived mini-X chromosome. (B) Thoracic bristles from flies with a mutation for the tiny (ty1) gene on the regular X chromosome and the wild-type tiny gene on the mini-X chromosome (ty1/Dp(1;f)LJ9, ty+). The individual on the left bears a paternally derived mini-X chromosome. The genotypically identical fly on the right bears a maternally derived mini-X chromosome. Arrows point to the thoracic bristles, which are smaller and finer (more mutant) in the flies bearing a paternally derived mini-X chromosome.