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Propagation of a Novel Cytoplasmic, Infectious and Deleterious Determinant Is Controlled by Translational Accuracy in Podospora anserina
Philippe Silara, Vicki Haedensa, Michèle Rossignola, and Hervé Lalucqueaa Institut de Génétique et Microbiologie, Université de Paris Sud, 91405 Orsay Cedex, France
Corresponding author: Philippe Silar, Institut de Génétique et Microbiologie, URA 2225, Université de Paris Sud, 91405 Orsay cedex, France., silar{at}igmors.u-psud.fr (E-mail)
Communicating editor: A. G. HINNEBUSCH
| ABSTRACT |
|---|
Some mutant strains of the filamentous fungus Podospora anserina spontaneously present a growth impairment, which has been called Crippled Growth (CG). CG is caused by a cytoplasmic and infectious factor, C. C is efficiently transmitted during mitosis but is not transmitted to the progeny after sexual crosses. C is induced by stationary phase and cured by various means, most of which stress the cells. Translational accuracy is shown to tightly regulate the propagation of C during the active growth period, because its propagation in dividing hyphae is restricted to cells that display an increased translational accuracy. However, induction of C in stationary phase proceeds independently from the translational accuracy status of the strain. CG does not seem to be accompanied by mitochondrial DNA modifications, although C activates the action of the Determinant of Senescence, another cytoplasmic and infectious element, which causes a disorganization of the mitochondrial genome. In addition, presence of C drastically modifies the spectrum of the mitochondrial DNA rearrangements in AS6-5 mat- cultures during Senescence. C seems to belong to the growing list of unconventional genetic elements. The biological significance of such elements is discussed.
AGING, in metazoa, is a complex phenomenon, which likely results from several causes (![]()
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Other cytoplasmic and infectious determinants have been described in many filamentous fungi, in which they promote various degenerative or differentiation processes (![]()
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| MATERIALS AND METHODS |
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Strains and growth conditions:
All strains are derived from the S strain. All strains are thus isogenic except for the mating type region and the indicated mutations. Descriptions of suppressor (that decrease translational accuracy) and antisuppressor (that increase translational accuracy) mutations can be found elsewhere (![]()
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Strain construction:
The double mutant strains were constructed by crossing the parental stains containing the single mutations. In each case, the putative double mutant was crossed with wild type to check for the segregation of both mutations and hence confirm the genotype of the double mutant.
Suppression level analysis:
Suppression level measures were performed as described (![]()
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mtDNA analysis of the AS6-5 strain:
Fresh AS6-5 mat+ and AS6-5 mat- strains were recovered from crosses between wild type and the AS6-5 strain of our collection. Immediately after germination, normal and CG cultures were set up and mtDNA was analyzed. The cultures were subsequently grown until Senescence appeared and mtDNA was again analyzed. mtDNA was extracted with the rapid extraction procedure (![]()
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| RESULTS |
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AS6-5 cultures can be obtained in two different states despite being grown in the same conditions:
While analyzing the AS6-5 strain of Podospora anserina (![]()
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It is possible to render normal Crippled cultures and vice versa by various means:
Apart from their spontaneous appearance, we observe that Crippled sectors that start from the inoculum arise at high frequency in AS6-5 cultures issued from mycelia that have been incubated at 27° on M2 medium for at least 2 days (Figure 2). Prolonged incubation in the same conditions for at least 4 days yields only pure Crippled cultures. This "stationary phase" effect occurs, albeit with varying speed, on all the media that we test and at temperatures ranging from 11° to 37°.
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The recovery of normal cultures from Crippled ones can be achieved by at least five means:
- By subculturing Crippled cultures at 37° on M2 medium.
- By subculturing them at 27° on M2 medium supplemented with 200 g/liter of saccharose, 500 mg/liter of paromomycin, or 1 g/liter of kasugamycin. Subculturing on our ascospore germination medium, which contains a low level of nutrient, is also very potent in reversing growth to normal and is used routinely (Figure 3). Explants taken from the growing edge of the culture, done in conditions (1) or (2), give birth to normal growing cultures. However, as stated in the previous paragraph, after several days of incubation, similar explants taken in the same area give birth to Crippled cultures, showing that curing is temporary (Figure 3).

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Figure 3. Reversion of CG by growth on ascospore germination medium. A Petri plate of ascospore germination medium was inoculated with a Crippled explant of an AS6-5 culture and incubated for 4 days at 27°. Explants were then taken at the edge of the culture, or near the explant. When inoculated on new M2 plates, the explant taken at the edge generates a normal culture showing that growth has been reversed to normal. The explant taken near the inoculum generates a mosaic culture. The initial plate was then further incubated for 5 days and explants were taken at the edge or beside the one that was located 5 days before at the edge of the culture. The first one generates a normal growing culture whereas the latter regenerates a mosaic culture showing that reversion is temporary. - By storing Crippled cultures at 4° for at least 3 months; mycelium explants from these stored Crippled cultures yield mosaic cultures consisting of Crippled and normal sectors.
- By starting new cultures with minute explants of a few articles; the resulting mycelia always have a normal morphology. By this procedure we have not observed a reproducible diminished regeneration frequency of the Crippled articles when compared to normal ones, suggesting that curing occurred through elimination of the alteration rather than selection of healthy hyphae.
- By irradiating Crippled mycelia with UV light (514 nM) with at least 100 J/m2; cells from the growing edge recover NG when further grown.
Appearance of Crippled Growth is controlled by translational fidelity:
The AS6-5 strain contains a mutation, located in a ribosomal protein, that restricts the readthrough brought about by suppressors during the translational decoding of UGA stop-codon and hence increases translational accuracy (![]()
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The AS4-44 strain, which carried a mutation in the elongation factor eEF1A (![]()
The role of antisuppressor mutations in promoting CG was confirmed by introducing a wild-type ectopic copy of AS4 into the ASA-27 mutant strain. Analysis reveals that CG could not be induced after passage in stationary phase in the resulting strain, whereas in the same conditions it was induced in the ASA-27 strain. The possibility for a strain to present Crippled is thus a recessive phenotype.
To further establish the relationship between accuracy and CG, double mutant strains were constructed and analyzed as previously. Results lead to three conclusions: (1) Increasing antisuppression enhances CG because the su12-2PR8 AS6-2 double antisuppressor mutant presents a very stable CG alteration very much like the one in AS6-5, whereas the su12-2PR8 and AS6-2 strains have unstable Crippled sectors. The double mutant strain needs to be incubated in stationary phase only 2 days, in order to obtain 100% explants (24 explants tested) that regenerate completely Crippled cultures. At least 6 days are necessary for the single mutants to obtain 100% of mosaics cultures (12 explants tested for each strain). (2) Decreasing global fidelity diminishes CG. Indeed, explants taken from the su12-1C1 AS6-5, su12-1C1 AS3-1 strains, which carry an omnipotent suppressor mutation associated with an antisuppressor, never produce CG cultures after passage in stationary phase even if incubated 10 days (12 explants tested for each strain). The su1-1 AS6-5 and su1-1 AS4-44 double mutants present an alteration that is less pronounced than that of the strain carrying the antisuppressor mutation alone, but do so with the same kinetics. (3) Increasing UGA readthrough has no effect on CG because the su4-1 AS6-5, su8-1 AS6-5, su4-1 AS4-44, and su8-1 AS4-44 double mutants, which carry the su4-1 or su8-1 tRNAUGA suppressor (![]()
CG is caused by a cytoplasmic and infectious element and is not transmitted through meiosis:
The modalities of appearance and disappearance of CG suggest that a nuclear mutation is not involved in the generation of the growth alteration. This is confirmed by "contamination" experiments. In these experiments, a small explant of Crippled donor mycelium is put 1 mm away from the growing edge of a normal recipient mycelium. Local anastomoses occur between the two mycelia. After several days of incubation, the resulting plates are observed. When some donor strains are used on AS6-5 NG recipient cultures (Table 1), CG sectors may be obtained on some plates downstream of the inoculi. A judicious choice in the mating types of the donor and recipient mycelia allows one to follow the nuclei after the anastomoses. Mating type analysis of the altered sectors shows that they contain only recipient nuclei, demonstrating that the element responsible for CG is cytoplasmic and infectious. We have called this element C. As proposed for other cytoplasmic traits, cultures that carry C are now referred to as [C+] and those that do not as [C-]. Data of such experiments (Table 1) show that growing NG mycelia never transmit the determinant, but such mycelia do so with the same efficiency as CG mycelia when they are in stationary phase, confirming that C is present during this phase. AS4-44 [C+] mycelia induce sectors in the AS6-5 [C-] recipient, demonstrating that the growth alteration, in these mutants, is indeed caused by the same element. Interestingly, wild-type and suppressor mycelia that are in stationary phase can also transmit CG, showing that all strains are [C+] during this phase. The difference between antisuppressor and wild-type/suppressor strains is thus the inability of the former to prevent the propagation of C in dividing hyphae. Indeed, C is never transmitted to wild-type and suppressor strains (0 successes in 81 attempts), while it is readily transmitted to antisuppressor strains (14 successes in 96 attempts; Table 2). As seen in Table 2, efficiency of contamination seems to depend on the donor/receptor couple.
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Meiotic transmission was analyzed with the following crosses:
AS7-2 [C+] x
AS6-2 [C+],
AS6-2 [C+] x
AS7-2 [C+],
AS4-44 [C+] x
AS7-2 [C+],
AS7-2 [C+] x
AS4-44 [C+] (all the cultures had grown Crippled). Because germination occurs on a special medium that cures C (see above), care was taken to transfer germinating ascospores very rapidly with the smallest bit of agar possible on M2 medium. Nevertheless, all 32 ascospores obtained from these crosses and carrying an antisuppressor mutation yield mycelia that are NG and thus [C-], showing that C is not efficiently transmitted through meiosis. In addition, the numerous crosses made over the years between antisuppressor strains or between antisuppressor strains and wild type have never given ascospores yielding directly Crippled mycelia, though C is present in the hyphae surrounding the cells that undergo the sexual process (crosses in P. anserina require about 1 wk to proceed in our standard conditions at which time cells are [C+]). However, all the ascospores that are recovered from these crosses can readily express C after passage in stationary phase.
C is different from the Determinant of Senescence:
Because P. anserina presents an unavoidable growth arrest caused by a cytoplasmic and infectious determinant (Senescence), we have investigated the relation between C and the Determinant of Senescence. The AS6-5 strain was chosen for these investigations. From young or senescent cultures of this strain, we could obtain subcultures in either the normal or Crippled morphologies, showing that C is different from the Determinant of Senescence. Whereas Senescence is correlated with mtDNA modifications, no obvious differences are observed in the mtDNA between CG or NG young AS6-5 cultures (Figure 4). This suggests that Crippled Growth is likely not due to some mtDNA mutation. However, the AS6-5 CG cultures have a drastically diminished life-span when compared with NG cultures because they have a longevity of 13.5 ± 2.0 cm whereas NG cultures have a longevity greater than 30 cm (![]()
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, whereas AS6-5 mat- cultures do not. Further analysis of the senescent AS6-5 normal or Crippled cultures (Figure 5) reveals that (1) AS6-5 mat+ cultures do amplify the senDNA
independently of their growth history, and (2) AS6-5 mat- cultures do not amplify senDNA
when grown normal but do amplify a large amount of senDNA
when grown Crippled.
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| DISCUSSION |
|---|
We have discovered a novel growth alteration that occurs in some strains of P. anserina. This Crippled Growth is due to some cellular malfunction, which results in slower mycelial growth speed, abnormal hyphal morphology, accumulation of pigment, shorter longevity, and reduced female fertility. It is caused by a novel cytoplasmic and infectious element, which we have called C, that is clearly different from the one that causes Senescence. However, C interacts in some way with the Determinant of Senescence because AS6-5 CG cultures have a drastically reduced longevity and a modified spectrum of mtDNA rearrangements during Senescence. C seems to belong to a large group of cytoplasmic and infectious determinants described in filamentous fungi, which cause morphological and/or fertility modifications (![]()
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Classically, two broad groups of hypotheses are put forward to explain determinants such as C. The first group relies solely on nucleic acid modifications (genetic explanation), whereas the second one postulates inheritable regulatory changes (epigenetic explanation). According to the first group of hypotheses, for example, either mutations located in the mtDNA that promote some kind of replicative advantage to the molecules that carry them, or activation of cryptic virus-like elements can result in cytoplasmic and infectious phenomena. This is the case, for example, in the "kalilo-based" senescence in Neurospora (![]()
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We thus favor the second group of hypotheses, which relies on epigenetic explanations. This group includes, but is not limited to, the following hypotheses:
- A self-activated structural modification of nucleic acid or an epigenetic modification sensus stricto (see
SELKER 1997 for a review of filamentous fungi epigenetic phenomena).
- A self-propagating alternative structure of a macromolecule, also now called prion. Such events have been demonstrated in the cases of the yeast
and URE3 elements (see TUITE and LINDQUIST 1996 ;
LANSBURY 1997 for reviews). It is likely to be the case for the s*
s transition, another cytoplasmic and infectious determinant of P. anserina that is involved in the control of vegetative incompatibility (COUSTOU et al. 1997 ).
- A self-positively regulated biosynthetic pathway as originally described for the lactose regulation in Escherichia coli (
NOVICK and WEINER 1957 ).
- A self-positively regulated decision pathway like the lytic/lysogenic choice in lambda bacteriophage (
PTASHNE 1992 ).
As is obvious from the above list, the main point of these hypotheses is the activation of a self-fueled phenomenon. It was pointed out a long time ago (![]()
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CG displays five main characteristics that may or may not be encountered in the other described cases of nonconventional genetic elements.
First, C is inheritable during mitosis but is not efficiently transmitted during meiosis. This has already been observed for other elements like the "Secteurs" and "Anneaux" in the ascomycete Nectria haematococca (![]()
Second, propagation of C seems to depend on translational accuracy. C is the third element to be discovered that is connected with translational accuracy and that has a nonconventional genetic transmission (![]()
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, behaves as a prion. So far no explanation has been given for the other. It is noteworthy that the two cellular degeneration syndromes of P. anserina are tightly regulated by translation, emphasizing the need for further study on the role of translation in the cell homeostasis. However, translation acts differently upon them because accuracy level per se does not seem to be involved in control of Senescence (![]()
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Third, C is induced by stationary phase in all strains. Several studies have shown that the regulatory network of the cell responds to growth-arrested conditions by inducing or repressing several genes (![]()
- During stationary phase, translational fidelity could be increased in all strains. This allows for the establishment of C. Upon growth renewal of wild type and suppressor strains, decrease of accuracy would impair production of C, which would then be diluted, allowing for normal growth. On the contrary, error level would be too low during the active growth phase in antisuppressor strains to prevent stoppage of C production. Antisuppressor mutations would thus mimic stationary phase conditions. We have as yet no proposition to explain how increased accuracy could generate a self-fueled process. Note that this hypothesis is in direct opposition to the one formulated by
ORGEL 1963 to explain aging, which stated that more error during translation would lead to an error catastrophe. Modifications of translation accuracy during stationary phase have been detected in E. coli, since during this phase translational frameshifting is increased (
BARAK et al. 1996 ;
WENTHZEL et al. 1998 ) and readthrough is decreased (
WENTHZEL et al. 1998 ).
- Alternatively, antisuppressor strains may lack a protein factor, which would prevent propagation of C during growth. This factor would be produced thanks to a translational error, because appearance of CG in a strain is negatively correlated with translational accuracy. Note that, despite having an increased UGA readthrough level, the double mutant strains carrying an antisuppressor mutation and a UGA suppressor tRNA still display CG, suggesting that a UGA readthrough should not be involved in the elimination of C.
Fourth, curing of C can be effected in numerous ways, most of which clearly stress the cells (high temperature, low temperature, high osmotic pressure, starvation, or UV-irradiation). This suggests that HSPs may be involved in the formation and/or maintenance of C. This has already been observed for the
prion (![]()
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Fifth, C influences Senescence, suggesting that both C and the Determinant of Senescence may act in similar pathways. We have recently proposed that the Determinant of Senescence acts by modifying, possibly at the translational level, the spectrum of the protein produced in the cytosol (![]()
The last question that we speculate upon is the relevance of CG and similar cytoplasmic and infectious phenomena to aging. As pointed out above, the establishment during evolution of such processes can be effected by the closure with a positive loop of a biosynthetic or regulatory pathway, through some mutational event in one of the actors of the cellular network. Some of these positive regulatory loops may surely be beneficial for survival and be selected by evolution. They would thus appear as differentiation processes. However, some, like C, may not always be advantageous. Their control is then crucial for the survival of the organisms. Uncontrolled loops may self-activate during the lifetime of the organism, spontaneously or in response to some environmental cue, and participate in the breakdown of the cellular homeostasis observed in old organisms. Activation of such loops would thus appear as an aging phenomenon. Through a complete change of the regulatory network, sexual reproduction could be an efficient way to eradicate the activated loop as seen in P. anserina. Sex may thus participate not only in clearing deleterious mutations but also in resetting such loops to the inactive state.
| ACKNOWLEDGMENTS |
|---|
We thank Drs. C. Vierny, M. Picard, M. Jacquet, and M. J. Daboussi for critical reading of the manuscript. This work was supported by grants from Centre Nationale de la Recherche Scientifique and Fondation pour la Recherche Médicale (Aide à l'Implantation des Jeunes Equipes).
Manuscript received June 25, 1998; Accepted for publication September 14, 1998.
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H. Lalucque and P. Silar Incomplete Penetrance and Variable Expressivity of a Growth Defect as a Consequence of Knocking Out Two K+ Transporters in the Euascomycete Fungus Podospora anserina Genetics, January 1, 2004; 166(1): 125 - 133. [Abstract] [Full Text] [PDF] |
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P. Silar, H. Lalucque, V. Haedens, D. Zickler, and M. Picard eEF1A Controls Ascospore Differentiation Through Elevated Accuracy, but Controls Longevity and Fruiting Body Formation Through Another Mechanism in Podospora anserina Genetics, August 1, 2001; 158(4): 1477 - 1489. [Abstract] [Full Text] [PDF] |
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