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Isolation of New Arabidopsis Mutants With Enhanced Disease Susceptibility to Pseudomonas syringae by Direct Screening
Sigrid M. Volkoa,b,c, Thomas Bollerb, and Frederick M. Ausubela,ca Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114,
b Department of Botany, University of Basel, CH-4056, Switzerland
c Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115
Corresponding author: Frederick M. Ausubel, Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, ausubel{at}frodo.mgh.harvard.edu (E-mail).
Communicating editor: V. SUNDARESAN
| ABSTRACT |
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To identify plant defense components that are important in restricting the growth of virulent pathogens, we screened for Arabidopsis mutants in the accession Columbia (carrying the transgene BGL2-GUS) that display enhanced disease susceptibility to the virulent bacterial pathogen Pseudomonas syringae pv. maculicola (Psm) ES4326. Among six (out of a total of 11 isolated) enhanced disease susceptibility (eds) mutants that were studied in detail, we identified one allele of the previously described npr1/nim1/sai1 mutation, which is affected in mounting a systemic acquired resistance response, one allele of the previously identified EDS5 gene, and four EDS genes that have not been previously described. The six eds mutants studied in detail (npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1) displayed different patterns of enhanced susceptibility to a variety of phytopathogenic bacteria and to the obligate biotrophic fungal pathogen Erysiphe orontii, suggesting that particular EDS genes have pathogen-specific roles in conferring resistance. All six eds mutants retained the ability to mount a hypersensitive response and to restrict the growth of the avirulent strain Psm ES4326/avrRpt2. With the exception of npr1-4, the mutants were able to initiate a systemic acquired resistance (SAR) response, although enhanced growth of Psm ES4326 was still detectable in leaves of SAR-induced plants. The data presented here indicate that eds genes define a variety of components involved in limiting pathogen growth, that many additional EDS genes remain to be discovered, and that direct screens for mutants with altered susceptibility to pathogens are helpful in the dissection of complex pathogen response pathways in plants.
PLANTS are constantly challenged by a variety of potentially pathogenic microorganisms and have developed an array of constitutive and inducible defense strategies designed to prevent and limit infections (![]()
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Many of the same host defense responses that are involved in avr-R gene mediated resistance also play a major role in defending the host against so-called virulent pathogens that elicit prominent disease symptoms (![]()
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Some host defense-related genes encode proteins with enzymatic properties that suggest they play a direct role in conferring resistance to pathogens. The PR proteins ß-1,3-glucanase and chitinase, for example, are lytic enzymes that are potentially capable of degrading polysaccharides found in the cell wall of many fungi, and both have been shown to exhibit anti-fungal properties when assayed in vitro (![]()
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A large number of defense responses have been identified on the basis of observations that they are induced in response to pathogen attack. In the past, however, most host-pathogen systems studied by plant pathologists were not amenable to high throughput genetic analysis, and it was therefore difficult to assess the significance of specific defense responses. To overcome this problem, many recent host-pathogen studies have utilized Arabidopsis thaliana as a model host plant, and comprehensive genetic analysis of host pathogen interactions is now feasible (![]()
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Two examples of the plant defense response that have been subjected to genetic analysis in Arabidopsis are phytoalexin synthesis and systemic acquired resistance (SAR). A series of phytoalexin deficient (pad) mutants that synthesize reduced levels of camalexin in response to the bacterial pathogen Pseudomonas syringae pv. maculicola (Psm) ES4326 have been isolated (![]()
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Three allelic Arabidopsis mutants that affect SAR are npr1 (![]()
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Based on the eds phenotypes of pad and npr1 mutants, a direct screen for Arabidopsis eds mutants was carried out previously in our laboratory with the goal of identifying genes other than NPR1 and PAD genes that are involved in restricting the growth of the virulent pathogen Psm ES4326. This screen led to the identification of 10 eds mutants that are neither pad nor npr1 mutants that define at least eight new complementation groups (![]()
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In this article, we report the results of a new screen for eds mutants to low dose infections of Psm ES4326. Among 11 putative eds mutants isolated, we identified one npr1 mutant (![]()
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| MATERIALS AND METHODS |
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Bacteria, plants, growth conditions:
The bacterial strains Pseudomonas syringae pv. maculicola ES4326 (![]()
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Transgenic Arabidopsis thaliana ecotype Columbia containing a BGL2-GUS construct (![]()
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Mutant screen and genetic crosses:
The preparation of EMS mutagenized seeds of the Arabidopsis BGL2-GUS transgenic line has previously been described (![]()
2 test for goodness of fit.
Bacterial growth assays:
Plants grown in a growth chamber were infected with the relevant bacterium at the dose indicated. Three days later, bacterial growth was assayed by excising a leaf sample consisting of two 0.13-cm2 disks from each infected leaf using a cork borer, grinding the sample in 10 mM MgSO4 using a plastic pestle, and plating appropriate dilutions on the relevant bacterial growth medium containing the appropriate antibiotic(s). Four to eight leaves were excised per treatment per genotype. Growth data are reported as means and standard deviations of the log of the number of colony-forming bacterial units per square centimeter of leaf area (log cfu/cm2).
Assays for BGL2-GUS reporter gene activity after SA treatment:
Seeds were germinated and grown for 10 days on Murashige and Skoog (MS) medium (GIBCO BRL, Gaithersburg, MD) supplemented with 0.6% agar and 2% sucrose under 50 µE M-2 sec-1 fluorescent illumination at 20°. Thereafter, the seedlings were transferred either to fresh MS medium or to MS medium containing 0.5 mM sodium salicylate. After another 7 days of growth, a single leaf per seedling was removed and the assay for ß-glucuronidase (GUS) activity was performed as described previously (![]()
Camalexin assay:
Four-week-old plants were inoculated with Psm ES4326 at a dose of 106 cfu/cm2 and 36 hr later camalexin was determined as described previously (![]()
Powdery mildew infections and infection rating (IR) scores:
Erysiphe orontii isolate MGH was grown and maintained on the Arabidopsis mutant pad4 (![]()
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| RESULTS |
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Isolation of Arabidopsis mutants with enhanced disease susceptibility in response to Psm ES4326 infection:
Genetic analysis of 12 Arabidopsis eds mutants isolated previously in our laboratory showed that they defined eight complementation groups, indicating that the screen for eds mutants had not been saturated. To obtain additional Arabidopsis mutants that are altered in their response to the virulent bacterial phytopathogen P. syringae pv. maculicola (Psm) ES4326, we performed a new genetic screen using plants derived from EMS-mutagenesis of BGL2-GUS transgenic seeds (Columbia ecotype) (![]()
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One of the eds mutants is an allele of npr1:
Previously identified categories of Arabidopsis mutants that allow more growth of P. syringae include npr1 (![]()
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NPR1 has recently been cloned using a map-based approach and was found to encode a novel protein containing ankyrin repeats (![]()
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Arabidopsis phytoalexin deficient (pad) mutants are defective in the accumulation of camalexin and some pad mutants allow more growth of Psm ES4326 (![]()
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Genetic analyses of eds mutants:
We chose npr1-4, eds-15, eds-16, eds-19, eds-111, and eds-215 for additional genetic analysis because they reproducibly displayed the most severe eds phenotypes of the eleven mutants isolated in this screen. These six eds mutants were first subjected to complementation analysis (essentially as described by ![]()
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Previous genetic studies in our laboratory have identified eight EDS loci, designated EDS2, EDS3, EDS4, EDS5, EDS6, EDS7, EDS8, and EDS9 (![]()
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Based on the results of this genetic analysis, the names of the five eds mutants isolated in this study were changed as follows: eds-15 to eds10-1, eds-16 to eds11-1, eds-19 to eds5-2, eds-111 to eds12-1, and eds-215 to eds13-1. In summary, this screen led to the identification of at least four new eds loci involved in restricting the growth of Psm ES4326, plus two alleles of two previously known genes that affect disease susceptibility, eds5-2 and npr1-4.
The segregation patterns of the eds phenotypes reveal mutations in single nuclear genes:
In the crosses between Col-0 parent and eds mutant plants (Table 2), F1 plants displayed symptoms and bacterial titers similar to wild type in response to infection with Psm ES4326. This result indicates that all six eds mutations are recessive. Selfing of the F1 generation plants produced F2 progeny that were analyzed for the segregation of the eds phenotype in response to Psm ES4326 infection at a low dose (103 cfu/cm2). F2 plants displaying mild disease symptoms resembling those of Col-0 plants were scored as Eds+, and F2 plants displaying severe symptoms resembling those of eds parent plants were scored as Eds-. The results shown in Table 5 are consistent with the hypothesis that the eds phenotypes of npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1 segregate in a 3:1 ratio and therefore result from recessive mutations in single nuclear genes. Interestingly, all eds mutants characterized to date seem to be recessive alleles of single nuclear genes. The phenotypic characterization described below was performed with plants that had been taken through at least one parental backcross.
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Response to the bacterial avirulence gene avrRpt2 is unaffected in the eds mutants:
We have shown that the six eds mutants (npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1) allow at least 10-fold more growth of the virulent pathogen Psm ES4326 as compared to wild-type plants (Figure 2 and Table 1). It was of interest to determine whether the mutants are also compromised in the response to avirulent bacteria, such as the isogenic avirulent strain Psm ES4326 carrying the avirulence gene avrRpt2. P. syringae strains carrying avrRpt2 elicit a rapid gene-for-gene resistance response in Col-0 plants, the so-called hypersensitive response (HR), mediated by the resistance gene RPS2. As a consequence, bacteria carrying avrRpt2 reach a lower density in infected leaves than isogenic strains lacking avrRpt2. Leaves of Col-0 wild-type and eds mutant plants were inoculated with the virulent strain Psm ES4326 or with the isogenic avirulent strain Psm ES4326/avrRpt2 at a dose of 103 cfu/cm2. Figure 2 shows that wild-type plants and the six eds mutants npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1 were not significantly altered compared to wild-type with respect to the growth of Psm ES4326 carrying avrRpt2. Furthermore, leaves of the four mutant plants infected with a high dose (106 cfu/cm2 leaf area) of Psm ES4326/avrRpt2 gave rise to a macroscopically visible HR, indistinguishable from the response in wild type, manifested by characteristic tissue collapse within 20 hours after infection (data not shown). We therefore conclude that the four eds mutants maintain full resistance to the bacterial avirulence gene avrRpt2, including the capacity to mount an HR.
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Avirulent pathogen-mediated SAR response in eds mutants:
We have demonstrated that the mutants npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1 retain the capacity to recognize bacterial pathogens carrying the avirulence gene avrRpt2 and to suppress their growth in infected leaves. In Arabidopsis wild-type plants, the recognition of a bacterial avirulence gene by the corresponding resistance gene initiates a signal cascade that results in the activation of a plant defense mechanism known as systemic acquired resistance (SAR) (![]()
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Three fully expanded leaves per plant of npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, eds13-1, and Col-0 wild type were inoculated with either P. s. phaseolicola 3121/avrRpt2 at the dose of 106 cfu/cm2 or with 10 mM MgSO4 as a control (mock treatment). Eight days later, two uninfected leaves on the same plants were inoculated with Psm ES4326 at the dose of 103 cfu/cm2, and the density of the virulent pathogen was determined. As shown in Figure 3, the growth of Psm ES4326 was at least 10-fold reduced in wild-type plants and the five mutants eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1 pretreated with P. s. phaseolicola 3121, compared with the growth in plants that were mock-treated with 10 mM MgSO4. However, as shown previously (![]()
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Phenotypes of eds mutants in response to different bacterial phytopathogens:
The six eds mutants npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1 were isolated on the basis of their enhanced disease susceptibility phenotypes in response to Psm ES4326 infection. To test whether the mutants are specifically affected in restricting the growth of Psm ES4326 or whether these EDS genes are also involved in regulating the growth of a variety of virulent Col-0 bacterial pathogens, we extended the characterization of these eds mutants with respect to their response to the phytopathogenic strain P. syringae pv. tomato (Pst) DC3000, the multi-host pathogen P. aeruginosa UCBPP-PA14 (PA14), and the leaf-spotting pathogen Xanthomonas campestris pv. raphani (Xcr) 1946.
Wild-type, npr1-4, eds5-2, eds10-1, eds11-1, eds12-1, and eds13-1 mutant plants were inoculated with these bacterial pathogens at the doses indicated (Figure 4, AC), and the bacterial growth was assayed three days after inoculation. As shown in Figure 4A, the final titer of Pst DC3000 was at least 10-fold higher in all six eds mutants than it was in wild-type plants, indicating that these mutations also cause enhanced susceptibility to Pst DC3000. Furthermore, the symptoms of the eds mutants in response to Pst DC3000 infection were indistinguishable from those displayed after Psm ES4326 infection. These results are consistent with previous studies indicating that these two P. syringae pathogens are very similar in terms of the severity of disease symptoms they elicit in Col-0 leaves as well as of other disease-related characteristics (![]()
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Interestingly, Figure 4B shows that all six eds mutations are also more susceptible to P. aeruginosa UCBPP-PA14, a clinical isolate of the opportunistic pathogen that has been reported to be pathogenic on Arabidopsis in an ecotype-specific manner (![]()
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Some EDS genes play a role in restricting the growth of the fungal pathogen Erysiphe orontii:
It was of interest for us to determine whether the eds mutants are affected specifically in their susceptibility to bacterial pathogens, or whether the corresponding EDS genes are also involved in restricting the growth of eukaryotic pathogens, such as fungi. Erysiphe sp. are obligate biotrophic parasites that cause powdery mildew disease on a variety of plant species, including the Brassicaceae (![]()
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| DISCUSSION |
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To identify previously unknown genes that play a role in restricting pathogen growth, we performed a direct screen for Arabidopsis mutants that display an eds phenotype. We obtained 11 putative eds mutants which, when compared to wild type, supported at least 10-fold higher growth of the virulent pathogen P. syringae pv. maculicola (Psm) ES4326 following a low-dose inoculation. These 11 eds mutants were not affected in the synthesis of camalexin in response to Psm ES4326 and also were not affected in their ability to mount an HR in response to the isogenic avirulent strain carrying the avirulence gene avrRpt2.
The eds mutants were isolated in a transgenic plant carrying a chimeric BGL2-GUS construct which served as a convenient reporter for pathogen-induced activation of the PR gene BGL2. The 11 eds mutants were tested for the activation of the BGL2-GUS transgene in response to treatment with SA. Ten of the eds mutants showed SA-mediated activation of the transgene indicating that these mutants do not fall into the class of the previously characterized npr1/nim1/sai1 mutant (![]()
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The genetic analysis presented in Table 5 shows that all eds mutants as well as npr1-4 segregate as single recessive Mendelian genes. Four of the eds mutants, eds10-1 (eds-15), eds11-1 (eds-16), eds12-1 (eds-111), and eds13-1 (eds-215), define new genetic loci based on complementation testing with eds mutants isolated in previous screens (![]()
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The overall phenotype of eds5-2 (isolated in this study) in response to challenge with different bacterial pathogens is similar to that reported previously for eds5-1 (![]()
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Similar to the results we obtained for npr1-4, the remaining five eds mutants (eds10-1, eds11-1, eds12-1, eds13-1, and eds5-2) did not support increased growth of the avirulent strain Psm ES4326/avrRpt2. These findings indicate that all of the eds mutants, including npr1-4, retain the ability to recognize the product of the avirulence gene avrRpt2 and that the defense response pathways activated by avr-R gene interaction are sufficient to limit the growth of avirulent pathogens in the absence of defense functions provided by EDS genes.
As reported previously for several other eds mutants (![]()
The five eds mutants and npr1-4 characterized here affect diverse defense-related functions resulting in distinguishable phenotypes. All of these mutants display enhanced susceptibility to the closely related pseudomonads P. s. maculicola ES4326 and P. s. tomato DC3000, as well as to the distantly related P. aeruginosa UCBPP-PA14. However, only a subset of these mutants, eds5-2, eds10-1, and eds13-1, also display enhanced susceptibility to the leaf-spotting pathogen X. c. raphani 1946. Similarly, npr1-4, eds10-1, eds13-1, and eds5-2 are more susceptible to the obligate biotrophic fungus Erysiphe orontii whereas the phenotypes of eds11-1 and eds12-1 are indistinguishable from wild type after infection with the fungus. The data in Table 6 show that the defense responses defined by EDS genes are not equally effective against different pathogens and suggest that screens to isolate eds mutants using different pathogens will lead to the identification of novel EDS genes. Such a screen is currently being carried out in our laboratory using Erysiphe orontii MGH as the challenging pathogen (T. L. REUBER, unpublished data).
The fact that the genetic characterization presented in this and other studies revealed only a small number of allelic pairs among the eds mutants isolated to date indicates that there are a large number of nonredundant defense responses or defense response signaling pathways or both involved in limiting the growth of Psm ES4326. There is increasing evidence that plant defense responses can act in concert to restrict pathogen growth. For example, the PR proteins chitinase and glucanase have been shown to act synergistically to restrict the growth of certain fungal pathogens in vitro or when overexpressed in transgenic tobacco (![]()
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The eds mutants presented in this study are not equally susceptible to different prokaryotic and eukaryotic pathogens. These observations indicate that the defense responses affected in these eds mutants are not equally effective in restricting pathogen growth. Mutants, such as npr1-4, eds5-2, eds10-1, and eds13-1, that exhibit an eds phenotype in response to a variety of pathogens are likely to carry mutations in regulatory factors rather than in downstream components of pathogen-specific defense mechanisms. Mutations in the PAD4 gene, for example, render plants highly susceptible to both P. syringae strains as well as various phytopathogenic fungi, making this gene a candidate for encoding a pleiotropic regulator of defense responses (![]()
The data presented in this paper provide further support for the conclusion that direct screening for mutants with increased pathogen-susceptibility is a useful strategy for identifying Arabidopsis genes that encode defense-related functions. Cloning and further analysis of EDS genes should lead to new insights into the mechanisms effective in combating pathogen attack.
| ACKNOWLEDGMENTS |
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We thank XINNIAN DONG for providing the EMS-mutagenized BGL2-GUS seeds, JACQUELINE HEARD, T. LYNNE REUBER, JULIE STONE, PETE YORGEY, and other colleagues in the laboratory for many helpful discussions and for advice on the preparation of the manuscript. This work was supported by National Institutes of Health grant GM-48707 and by a grant from Monsanto Company awarded to F.M.A.
Manuscript received January 21, 1998; Accepted for publication March 4, 1998.
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) or with 106 cfu/cm2 P. s. phaseolicola 3121 carrying avrRpt2 to induce SAR (
). Three days after the secondary infection with Psm ES4326, infected leaves were excised and bacterial density was determined as log (cfu/cm2 leaf area). Each bar represents the mean and standard deviation of six replicate samples. The experiment was repeated with similar results.